Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq46 120 3e-22 >seq46 Length=1090308 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||| ||||| |||||||| ||||||| ||| || ||||||| Sbjct 104319 ACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCGTCCATCCTCG 104378 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | ||||||||||| || || || || || |||||||| ||| | Sbjct 104379 AGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATCTTGA 104438 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| || || | ||| | || || Sbjct 104439 ATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCTTA 104498 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || || ||||| Sbjct 104499 CCAGTGAGAGTCTTGACGAAGATTTGCAT 104527 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| |||||||| |||||||| || | ||| || |||||| Sbjct 104547 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCA 104606 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| |||||||| || || ||||| || ||||||||||| | Sbjct 104607 AGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCCTGA 104666 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | |||||||| | ||| | || ||| Sbjct 104667 ATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTG 104726 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || |||||||| ||||| Sbjct 104727 CCAGTGAGAGTCTTGACAAAAATTTGCAT 104755 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || ||||| || ||| | || || ||||||||||| || ||| Sbjct 104787 GTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGTTCGGCCGTCCTCGAGCTGCTTGCCA 104846 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||| ||||| || || ||||||||||||||| || || ||| Sbjct 104847 GCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTA 104906 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| |||||| | | ||||||||| | || | || |||||||| Sbjct 104907 ACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 104959 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || |||||||| ||||||| ||| || ||||||| Sbjct 104091 ACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCG 104150 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | ||||||||||| || || || || || ||||||||||| Sbjct 104151 AGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGG 104210 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| |||| | || || || | || | || || Sbjct 104211 ATCTTAGACTTGACGTTGTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTT 104270 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || ||||||||||| Sbjct 104271 CCAGTCAATGTCTTCACGAAAATCTGCAT 104299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827439107520