Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq24 140 3e-28
>seq24
Length=853129
Score = 140 bits (154), Expect = 3e-28
Identities = 299/444 (67%), Gaps = 2/444 (0%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|| || || |||| ||| | ||| |||||||| || || || || | | ||| |||||
Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063
||||| || || || || ||| ||| |||||||| ||| || | || |||
Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGACTTGTAGTATTTCTCGTTACCAAGAGCCGTCAAA 483260
Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123
| || ||| || || || || ||||| || ||||| | | | ||||||| || | |||
Sbjct 483261 AGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAGTAAG 483320
Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183
| |||| || |||||||| || | || || || ||| ||||| |||| |||
Sbjct 483321 GCACAGGGGAGAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGATGATA 483380
Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTAAT-AAGTGTTTAAACATTATACAAGCAAA 16242
|| || | || ||| | | | | | ||||| ||| | | || |||||
Sbjct 483381 TCCTGGACAGC-CTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCATGCAAA 483439
Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302
|| ||||| || ||||| | | || | |||||| ||||| || ||||| | |||
Sbjct 483440 GTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACCAGCCAT 483499
Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362
|| || || || || | |||||| ||||| ||||| |||||| ||||| || |||||
Sbjct 483500 GAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAATGCCTTC 483559
Query 16363 AACTGCGGCAAATGCAACCAATCG 16386
|| || || ||||||||||| ||
Sbjct 483560 CACGGCAGCGAATGCAACCAAACG 483583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462508762416000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |