Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq22 116 3e-21
seq46 114 1e-20
>seq22
Length=1308897
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| |||||||||||| || ||| | || || || ||
Sbjct 1149368 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCCTCAAGCTGC 1149309
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| ||||| || ||||| ||||||||||| ||||| | |||||||||||| || ||
Sbjct 1149308 TTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTG 1149249
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | |||| | ||||||||| | ||| || ||||| |||||
Sbjct 1149248 GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTG 1149189
Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||| ||||| ||||||
Sbjct 1149188 AGGGTCTTCACGAAGATCTGCATG 1149165
>seq46
Length=1090308
Score = 114 bits (126), Expect = 1e-20
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGTTGGCGATCGTCGT 45185
|||||||| || ||||||||||| || |||||||||||| || |||| || | || |
Sbjct 104319 ACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAAGTT--CGTCCATCCT 104376
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
| || || || || ||||| || | ||||||||||| || || | ||||||||| ||
Sbjct 104377 CGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATCTT 104436
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
||| || ||| || | | | |||| ||| || |||| |||||| ||||
Sbjct 104437 GAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCT 104496
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| || || |||||||| || |||||||||||
Sbjct 104497 TACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||||| |||||||| |||||||||||| ||| ||| | || ||
Sbjct 104091 ACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCG 104150
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | ||||||||||| || || | |||||||||||||
Sbjct 104151 AGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGG 104210
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||| ||||| |||| || || |||||
Sbjct 104211 ATCTTAGACTTGACGTTGTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTT 104270
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||| || || |||||
Sbjct 104271 CCAGTCAATGTCTTCACGAAAATCTGCAT 104299
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || || || || ||||||||||| || || | || ||
Sbjct 104547 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCA 104606
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| ||||||||||| ||||| | |||||||||||| |
Sbjct 104607 AGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCCTGA 104666
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| || ||||| | ||| || ||||||
Sbjct 104667 ATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTG 104726
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || |||||||| ||||| ||||||||
Sbjct 104727 CCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395072503611760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |