Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq73 300 1e-76 seq46 111 1e-19 >seq73 Length=484926 Score = 300 bits (332), Expect = 1e-76 Identities = 1193/1856 (64%), Gaps = 48/1856 (3%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| |||||||||||||| ||||||| || | |||||| | ||||| || Sbjct 52299 GTGCGGAGATAATACATGCCGGTCTTCAAGCCAAGCTTCCAGCCAGTGAAATGCATGCTT 52240 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | || | ||||| | || | ||||| |||||| || Sbjct 52239 GTGATCTTGCCCATGGTGGGGTCCTTCATGTGAATGTTCATTGACTGGGACTGATCAATG 52180 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGT-ACGCATCGACATTTCCCATACGGT 22323 || || || || || || ||||| | | |||||| |||| || || ||||| ||||| Sbjct 52179 AAAGCACCACGGTCAGCAGCCATCTGCA-CAATGTTACGCTGAGAAATCTCCCAGACGGT 52121 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTAT 22382 |||||| || | | || ||| | || || | | || | |||||| ||| || || Sbjct 52120 CTTGTAGAGAGCCTTAATATCTGATGGGAT-GTTGGGAATATTCTGGATGGAACCACCAT 52062 Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442 || || || || || | || ||| | || || || | ||| |||| Sbjct 52061 CAGCGATAATGCGGTTCTTCATGTTGTCAGACCAGAGTCCCATATCGACAAGATCCTTGA 52002 Query 22443 CCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTG 22501 || | |||||||||| || ||||| || | |||| || ||||| |||||||||| Sbjct 52001 GAAGCCAAGGGTTCACCACCTGGAACTCTCCTG-CAAGCACACGGCGGGAGTAAATGTTG 51943 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || || | || ||| || || ||||| || || || ||| Sbjct 51942 GAGGTGTATGGCTCAAAGCACTCGTTGAAACCAAGGATCTGGCTAGTGCTGGCAGTTGGC 51883 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGC- 22618 || || || | ||| || ||| | | ||| || | |||| | | || | ||| Sbjct 51882 ATAGGAGCAACCAGAAGACTGTTGCGGATGCCATGTTGCTTGATCTGCTGCT-TCAAGCT 51824 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 ||| ||| ||||| ||||| | || || || |||||||||| ||||| | | | Sbjct 51823 ATC--CCAATCCCAGAGATCTGTAGGAGTGACTC---CCCACATATCATATTGAAGCTCT 51769 Query 22679 CCG--CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT 22736 || |||| || ||| ||||| || || || ||||| |||| ||| |||||| | Sbjct 51768 CCTTTCGAC--GCAGGGGATCCTTCATATGTCTCATACGGGCCATTAATCTTGGCAAGCT 51711 Query 22737 CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA----T 22792 | | || | || |||| || |||||||||||||||| | || | | Sbjct 51710 CTACGGAAGCAGTAAGAGCACCGTGGTAGATAGTCTCGAAGATTTGAATATTGAGATGCT 51651 Query 22793 TCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCC 22852 | | | || || || | || | ||||| || ||| || ||||||| ||| Sbjct 51650 TTGCCTCAGGTGAG----TCAAAAGGAACACGCAGAGCCAAGAAAGCATCCGCCAATCCC 51595 Query 22853 TGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTT--TTGCCTCGGGCAAAG 22910 || || || | | || || || | | || | ||| ||||||| || | | Sbjct 51594 TGTACACCAACTGCAATGGGACGATGACGGAAGTTG--CTCTTCCTTGCCTCTGGGACGG 51537 Query 22911 GATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNN 22970 | || | || |||||| | |||||||||| |||| |||| || | Sbjct 51536 GGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGTAACAACTTGGACGACTTCGT 51477 Query 22971 NNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA-----ACAAACTTGTTGACGGCGAT 23025 | ||||| ||| | || ||||| || ||||| || | || || Sbjct 51476 GAAGCTTCTGGAAGTCATAA--GTCCCATTGTTCATATCCACAAAGGTGGGAAGTGCAAT 51419 Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 ||||| | ||||| || || ||||| || || | ||| || ||||| || || || Sbjct 51418 AGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCTGTGCA 51359 Query 23086 TAGATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 | ||| |||| || || |||| || |||||||||| || || ||||||| Sbjct 51358 CAAGTTGGAGCTACGG---ATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCACGC 51302 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 |||||||||||||||| | || | || |||||| || | || | ||| | ||| Sbjct 51301 ATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACCA 51242 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACA 23261 | | ||||| | || ||| || ||| ||| || ||| ||||| | ||||| Sbjct 51241 GAGCTTTTGAGCCTTTACG-GTCTTTCGGCCCTTGCCCTCGCGCTCATACTTCTCGTACA 51183 Query 23262 ACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320 | || ||||| || | ||||| ||| || || || || || | | | |||||||| Sbjct 51182 AAGCTTCAAACTCATCTCCGTAGACA-TCTGCTAGACCAGGACACTCATTTGGACACATC 51124 Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 || ||||| | || || ||||| | |||| || ||||| || ||||| | || Sbjct 51123 AGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCA 51064 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 ||||| || ||||| || || || ||||| || || |||||| | | ||| | || Sbjct 51063 TAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGGAAC 51004 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || || || || ||||| ||||| ||||| | ||||| || || || | ||| || Sbjct 51003 TCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGACGCTTGTTA 50944 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || || ||||| || || | ||| ||||||||| | || | ||||| ||||| | ||| Sbjct 50943 CCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACAATACCA 50884 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 || || ||| ||| | | || || | ||||| | |||| | | | Sbjct 50883 TTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGTGGATATTG 50824 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | ||| ||||| ||| | ||||| ||||| || ||| ||||| || || ||||| Sbjct 50823 AGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCATAGATA 50764 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 || || |||||||| || || | | || | ||| || || ||||| || || | || Sbjct 50763 CCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAGCCTGAGGG 50704 Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 || | || ||| ||||| || || || || ||||| |||||||| | ||| Sbjct 50703 GTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGACATCAAGTTG 50644 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || ||||| |||| ||||| || || || || ||||| | || || ||||| ||| Sbjct 50643 TATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACACGCATGATC 50584 Query 23861 ATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 |||| ||| || | ||| ||| | || |||| || || |||||||| | || Sbjct 50583 ATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAACGCTCCAAT 50524 Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || ||||||||||| | ||||| || |||||||||| || || || ||||| Sbjct 50523 GTCTTGAATCCAAAATATTGGTAGTTGAAATCACGATCGTAGACAATCGCTGAATT 50468 >seq46 Length=1090308 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||| || |||||| | || || ||| |||| Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| || | || || ||||| Sbjct 104695 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAA 104636 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| | || || ||| | || || ||| Sbjct 104635 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAAC 104576 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| |||||||| |||| ||| | || | || |||| Sbjct 104575 ATCCAAAAAGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGGTA 104527 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || || || || || ||| | || ||||| ||||| Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || || ||||| || | || || ||||| Sbjct 104467 GACACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAA 104408 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || ||||||||||| ||| | || || | | | ||| ||||||| || || Sbjct 104407 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGA-TGGACGAACTTTGAGCGACTACAA 104349 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| || ||||| || |||| || Sbjct 104348 CATCCAAAAGGAGAGCACTCTCCACTTGGTTCT 104316 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| || || || ||||| | || || ||| | || Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| || | || || ||||| Sbjct 104239 GATACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 104180 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || || | ||| ||||||| || ||| Sbjct 104179 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAAC 104120 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||| ||||| || |||| || Sbjct 104119 ATCCAGAAGGAAAGCACTCTACACTTGGTCCT 104088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763279635200