Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq73 300 1e-76
seq46 111 1e-19
>seq73
Length=484926
Score = 300 bits (332), Expect = 1e-76
Identities = 1193/1856 (64%), Gaps = 48/1856 (3%)
Strand=Plus/Minus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
||||| |||||||||||||| ||||||| || | |||||| | ||||| ||
Sbjct 52299 GTGCGGAGATAATACATGCCGGTCTTCAAGCCAAGCTTCCAGCCAGTGAAATGCATGCTT 52240
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || | || | ||||| | || | ||||| |||||| ||
Sbjct 52239 GTGATCTTGCCCATGGTGGGGTCCTTCATGTGAATGTTCATTGACTGGGACTGATCAATG 52180
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGT-ACGCATCGACATTTCCCATACGGT 22323
|| || || || || || ||||| | | |||||| |||| || || ||||| |||||
Sbjct 52179 AAAGCACCACGGTCAGCAGCCATCTGCA-CAATGTTACGCTGAGAAATCTCCCAGACGGT 52121
Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTAT 22382
|||||| || | | || ||| | || || | | || | |||||| ||| || ||
Sbjct 52120 CTTGTAGAGAGCCTTAATATCTGATGGGAT-GTTGGGAATATTCTGGATGGAACCACCAT 52062
Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442
|| || || || || | || ||| | || || || | ||| ||||
Sbjct 52061 CAGCGATAATGCGGTTCTTCATGTTGTCAGACCAGAGTCCCATATCGACAAGATCCTTGA 52002
Query 22443 CCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTG 22501
|| | |||||||||| || ||||| || | |||| || ||||| ||||||||||
Sbjct 52001 GAAGCCAAGGGTTCACCACCTGGAACTCTCCTG-CAAGCACACGGCGGGAGTAAATGTTG 51943
Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561
|| ||| | || || || | || ||| || || ||||| || || || |||
Sbjct 51942 GAGGTGTATGGCTCAAAGCACTCGTTGAAACCAAGGATCTGGCTAGTGCTGGCAGTTGGC 51883
Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGC- 22618
|| || || | ||| || ||| | | ||| || | |||| | | || | |||
Sbjct 51882 ATAGGAGCAACCAGAAGACTGTTGCGGATGCCATGTTGCTTGATCTGCTGCT-TCAAGCT 51824
Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678
||| ||| ||||| ||||| | || || || |||||||||| ||||| | | |
Sbjct 51823 ATC--CCAATCCCAGAGATCTGTAGGAGTGACTC---CCCACATATCATATTGAAGCTCT 51769
Query 22679 CCG--CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT 22736
|| |||| || ||| ||||| || || || ||||| |||| ||| |||||| |
Sbjct 51768 CCTTTCGAC--GCAGGGGATCCTTCATATGTCTCATACGGGCCATTAATCTTGGCAAGCT 51711
Query 22737 CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA----T 22792
| | || | || |||| || |||||||||||||||| | || | |
Sbjct 51710 CTACGGAAGCAGTAAGAGCACCGTGGTAGATAGTCTCGAAGATTTGAATATTGAGATGCT 51651
Query 22793 TCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCC 22852
| | | || || || | || | ||||| || ||| || ||||||| |||
Sbjct 51650 TTGCCTCAGGTGAG----TCAAAAGGAACACGCAGAGCCAAGAAAGCATCCGCCAATCCC 51595
Query 22853 TGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTT--TTGCCTCGGGCAAAG 22910
|| || || | | || || || | | || | ||| ||||||| || | |
Sbjct 51594 TGTACACCAACTGCAATGGGACGATGACGGAAGTTG--CTCTTCCTTGCCTCTGGGACGG 51537
Query 22911 GATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNN 22970
| || | || |||||| | |||||||||| |||| |||| || |
Sbjct 51536 GGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGTAACAACTTGGACGACTTCGT 51477
Query 22971 NNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA-----ACAAACTTGTTGACGGCGAT 23025
| ||||| ||| | || ||||| || ||||| || | || ||
Sbjct 51476 GAAGCTTCTGGAAGTCATAA--GTCCCATTGTTCATATCCACAAAGGTGGGAAGTGCAAT 51419
Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085
||||| | ||||| || || ||||| || || | ||| || ||||| || || ||
Sbjct 51418 AGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCTGTGCA 51359
Query 23086 TAGATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142
| ||| |||| || || |||| || |||||||||| || || |||||||
Sbjct 51358 CAAGTTGGAGCTACGG---ATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCACGC 51302
Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202
|||||||||||||||| | || | || |||||| || | || | ||| | |||
Sbjct 51301 ATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACCA 51242
Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACA 23261
| | ||||| | || ||| || ||| ||| || ||| ||||| | |||||
Sbjct 51241 GAGCTTTTGAGCCTTTACG-GTCTTTCGGCCCTTGCCCTCGCGCTCATACTTCTCGTACA 51183
Query 23262 ACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320
| || ||||| || | ||||| ||| || || || || || | | | ||||||||
Sbjct 51182 AAGCTTCAAACTCATCTCCGTAGACA-TCTGCTAGACCAGGACACTCATTTGGACACATC 51124
Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380
|| ||||| | || || ||||| | |||| || ||||| || ||||| | ||
Sbjct 51123 AGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCA 51064
Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440
||||| || ||||| || || || ||||| || || |||||| | | ||| | ||
Sbjct 51063 TAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGGAAC 51004
Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500
|| || || || || ||||| ||||| ||||| | ||||| || || || | ||| ||
Sbjct 51003 TCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGACGCTTGTTA 50944
Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560
|| || ||||| || || | ||| ||||||||| | || | ||||| ||||| | |||
Sbjct 50943 CCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACAATACCA 50884
Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620
|| || ||| ||| | | || || | ||||| | |||| | | |
Sbjct 50883 TTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGTGGATATTG 50824
Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680
| ||| ||||| ||| | ||||| ||||| || ||| ||||| || || |||||
Sbjct 50823 AGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCATAGATA 50764
Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740
|| || |||||||| || || | | || | ||| || || ||||| || || | ||
Sbjct 50763 CCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAGCCTGAGGG 50704
Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800
|| | || ||| ||||| || || || || ||||| |||||||| | |||
Sbjct 50703 GTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGACATCAAGTTG 50644
Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860
|| || ||||| |||| ||||| || || || || ||||| | || || ||||| |||
Sbjct 50643 TATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACACGCATGATC 50584
Query 23861 ATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920
|||| ||| || | ||| ||| | || |||| || || |||||||| | ||
Sbjct 50583 ATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAACGCTCCAAT 50524
Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|| || ||||||||||| | ||||| || |||||||||| || || || |||||
Sbjct 50523 GTCTTGAATCCAAAATATTGGTAGTTGAAATCACGATCGTAGACAATCGCTGAATT 50468
>seq46
Length=1090308
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||| || |||||| | || || ||| ||||
Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| | || ||||||||| || | || || |||||
Sbjct 104695 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAA 104636
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || || |||||||| ||| | || || ||| | || || |||
Sbjct 104635 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAAC 104576
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||||||||| |||||||| |||| ||| | || | || ||||
Sbjct 104575 ATCCAAAAAGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGGTA 104527
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||||| || || || || || ||| | || ||||| |||||
Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || || ||||| || | || || |||||
Sbjct 104467 GACACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAA 104408
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||||| || ||||||||||| ||| | || || | | | ||| ||||||| || ||
Sbjct 104407 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGA-TGGACGAACTTTGAGCGACTACAA 104349
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| ||||| || ||||| || |||| ||
Sbjct 104348 CATCCAAAAGGAGAGCACTCTCCACTTGGTTCT 104316
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| |||| || || || ||||| | || || ||| | ||
Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | ||||| | || ||||||||| || | || || |||||
Sbjct 104239 GATACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 104180
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||||||||| ||| | || || | ||| ||||||| || |||
Sbjct 104179 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAAC 104120
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||| ||||| || |||| ||
Sbjct 104119 ATCCAGAAGGAAAGCACTCTACACTTGGTCCT 104088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763279635200
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