Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq24 118 2e-21 seq73 100 6e-16 >seq24 Length=853129 Score = 118 bits (130), Expect = 2e-21 Identities = 335/506 (66%), Gaps = 24/506 (5%) Strand=Plus/Minus Query 101844 TCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAA---CG 101900 ||||| |||||||||||||| | ||||| ||| ||||| ||| ||| || | Sbjct 483654 TCCCCTGCATCAAGAAGAAGGCCGATTGGGCAGTTAGATGGATTCAAGACAAGAAGTCCA 483595 Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 || || ||| | ||||| || ||||| || ||||| || ||||| |||||| | | Sbjct 483594 CCTTCGCCCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCATTTTCTTCAGTGGTTCTT 483535 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | ||| | || || ||| | ||||| | || | || ||||||| |||| || || | Sbjct 483534 TTGCAGCTATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTGGTCTGACCTTTTCGAACG 483475 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080 || |||| ||| | ||||| || || ||| ||||||||||||| | || || Sbjct 483474 AGCTCATCTCTCGTGACGAGGGCCTGCATACCGACTTTGCATGCCTTCTATT-------- 483423 Query 102081 GTTTT--GTTGATAC-CCCATCAAG-AGAAAGG--ATTCTTGAAATTGTCACTGAAGCCG 102134 || | |||| | || |||| | | ||| | | || || |||| ||||| | Sbjct 483422 -TTCTCACTTGAAGCACCGCCCAAGCAAACAGGCTGTCCAGGATATCATCACCGAAGCTG 483364 Query 102135 TCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACT 102194 | ||||| |||||||| | |||| | || || | ||| | || ||||||| Sbjct 483363 TTGCCATTGAGCAAGAATTCTTAACAGAGGCTCTCCCCTGTGCCTTACTCGGCATGAACT 483304 Query 102195 GCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG-- 102252 | | |||| || || || || || || || ||| ||| ||| | | || Sbjct 483303 CCGCTCTCATGAAGCAATATATCGAGTTCGTCGCTGATCGACTTTTGACGGCTCTTGGTA 483244 Query 102253 ACTAGAAAAGCACTATAATGTTA-CCAACCCCTTCCCATTCATGGACAATATTTCCCTCG 102311 || ||||| |||| || || | | ||||||||| |||||||| ||||| || |||| Sbjct 483243 ACGAGAAA--TACTACAA-GTCAGCAAACCCCTTCGACTTCATGGAGAATATCTCACTCG 483187 Query 102312 AGAATAAGACCAACTTTTTTGAAAAG 102337 |||||||||||| ||||| ||| Sbjct 483186 CTGGTAAGACCAACTTCTTTGAGAAG 483161 >seq73 Length=484926 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 94824 CTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGA 94883 ||| || |||||||| ||||| |||||||| || || | | | | |||||||| || Sbjct 50782 CTTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGA 50723 Query 94884 GGAAAGTTGGGGTGTGACTG-TTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAAT 94942 || | || | ||| | ||||| | | || ||||| || |||||||| || || | Sbjct 50722 TGACATCTGAGCC-TGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGT 50664 Query 94943 AGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGC 95002 | | ||||||| | | ||||| || || | |||| || ||| || || || | Sbjct 50663 ACTTGTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATAC 50604 Query 95003 CGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAACCA 95044 | |||||||||||||| ||||||| || ||||||||||||| Sbjct 50603 CAACAGCCACACGCATGATCATGTGTTGTGGGCGCTCAACCA 50562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989576899734800