Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq24 118 2e-21
seq73 100 6e-16
>seq24
Length=853129
Score = 118 bits (130), Expect = 2e-21
Identities = 335/506 (66%), Gaps = 24/506 (5%)
Strand=Plus/Minus
Query 101844 TCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAA---CG 101900
||||| |||||||||||||| | ||||| ||| ||||| ||| ||| || |
Sbjct 483654 TCCCCTGCATCAAGAAGAAGGCCGATTGGGCAGTTAGATGGATTCAAGACAAGAAGTCCA 483595
Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960
|| || ||| | ||||| || ||||| || ||||| || ||||| |||||| | |
Sbjct 483594 CCTTCGCCCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCATTTTCTTCAGTGGTTCTT 483535
Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020
| ||| | || || ||| | ||||| | || | || ||||||| |||| || || |
Sbjct 483534 TTGCAGCTATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTGGTCTGACCTTTTCGAACG 483475
Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080
|| |||| ||| | ||||| || || ||| ||||||||||||| | || ||
Sbjct 483474 AGCTCATCTCTCGTGACGAGGGCCTGCATACCGACTTTGCATGCCTTCTATT-------- 483423
Query 102081 GTTTT--GTTGATAC-CCCATCAAG-AGAAAGG--ATTCTTGAAATTGTCACTGAAGCCG 102134
|| | |||| | || |||| | | ||| | | || || |||| ||||| |
Sbjct 483422 -TTCTCACTTGAAGCACCGCCCAAGCAAACAGGCTGTCCAGGATATCATCACCGAAGCTG 483364
Query 102135 TCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACT 102194
| ||||| |||||||| | |||| | || || | ||| | || |||||||
Sbjct 483363 TTGCCATTGAGCAAGAATTCTTAACAGAGGCTCTCCCCTGTGCCTTACTCGGCATGAACT 483304
Query 102195 GCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG-- 102252
| | |||| || || || || || || || ||| ||| ||| | | ||
Sbjct 483303 CCGCTCTCATGAAGCAATATATCGAGTTCGTCGCTGATCGACTTTTGACGGCTCTTGGTA 483244
Query 102253 ACTAGAAAAGCACTATAATGTTA-CCAACCCCTTCCCATTCATGGACAATATTTCCCTCG 102311
|| ||||| |||| || || | | ||||||||| |||||||| ||||| || ||||
Sbjct 483243 ACGAGAAA--TACTACAA-GTCAGCAAACCCCTTCGACTTCATGGAGAATATCTCACTCG 483187
Query 102312 AGAATAAGACCAACTTTTTTGAAAAG 102337
|||||||||||| ||||| |||
Sbjct 483186 CTGGTAAGACCAACTTCTTTGAGAAG 483161
>seq73
Length=484926
Score = 100 bits (110), Expect = 6e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 94824 CTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGA 94883
||| || |||||||| ||||| |||||||| || || | | | | |||||||| ||
Sbjct 50782 CTTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGA 50723
Query 94884 GGAAAGTTGGGGTGTGACTG-TTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAAT 94942
|| | || | ||| | ||||| | | || ||||| || |||||||| || || |
Sbjct 50722 TGACATCTGAGCC-TGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGT 50664
Query 94943 AGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGC 95002
| | ||||||| | | ||||| || || | |||| || ||| || || || |
Sbjct 50663 ACTTGTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATAC 50604
Query 95003 CGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAACCA 95044
| |||||||||||||| ||||||| || |||||||||||||
Sbjct 50603 CAACAGCCACACGCATGATCATGTGTTGTGGGCGCTCAACCA 50562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989576899734800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |