Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq73 255 7e-63 seq24 100 4e-16 >seq73 Length=484926 Score = 255 bits (282), Expect = 7e-63 Identities = 1311/2068 (63%), Gaps = 55/2068 (3%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| || || |||| | || || ||||| ||||| || || || | Sbjct 52329 GTGAATTGAATAGGCGCACTGGCGGCCATTGTGCGGAGATAATACATGCCGGTCTTCAAG 52270 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || || |||| || |||||||| || || | ||| | || || || Sbjct 52269 CCAAGCTTCCAGCCAGTGAAATGCATGCTTGTGATCTTGCCCATGGTGGGGTCCTTCATG 52210 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || ||||| || || ||||| ||||| || || | ||| |||||||| | | Sbjct 52209 TGAATGTTCATTGACTGGGACTGATCAATGAAAGCACCACGGTCAGCAGCCATCTGCACA 52150 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || | || | ||| ||||| | || || || | |||||||||| ||| | | Sbjct 52149 ATGTTACGCTGAGAAATCTCCCAGACGGTCTTGTAGAGAGCCTTAATATCTGATGGGATG 52090 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | ||||||| ||||| |||||||| | ||||| | ||||| || | ||| | Sbjct 52089 TTGGGAATATTCTGGATGGAACCACCATCAGCGATAATGCGGTTCTTCATGTTGTCAGAC 52030 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | | | ||| | | | | || || ||||| || || ||||| ||||| Sbjct 52029 CAGAGTCCCATATCGACAAGATCCTTGAGAAGCCAAGGGTTCACCACCTGGAACTCTCCT 51970 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | | || | || | |||||| || ||| || || || | |||| || || Sbjct 51969 GCAAGCACACGGCGGGAGTAAATGTTGGAGGTGTATGGCTCAAAGCACTCGTTGAAACCA 51910 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | || || ||| ||||| |||||||| || |||| | ||| || | | || Sbjct 51909 AGGATCTGGCTAGTGCTGGCAGTTGGCATAGGAGCAACCAGAAGACTGTTGCGGATGCC- 51851 Query 62523 TATGTTC--TGATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACA 62579 ||||| |||| | | ||| || | | |||||| ||| ||||| | || || Sbjct 51850 -ATGTTGCTTGATCTGCTGCTTCAAGCTAT-CCCAATCCCAGAGATCTGTAGGAGTGACT 51793 Query 62580 NNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATAT 62639 |||||| || || || || |||||| ||||||| ||||| Sbjct 51792 CCCCACATATCATATTGAAGCTCTCCTTTCGACGCAGGGGATCCTTCATATGTCTCATAC 51733 Query 62640 GGTCCTTCCTTCTCAGCTAGTT-TAC--AACTCGCCTCTAATGCACCGTAATAAATGGTT 62696 || || | ||| || || | ||| || || | ||||||| || || || Sbjct 51732 GGGCCATTAATCTTGGCAAGCTCTACGGAA---GCAGTAAGAGCACCGTGGTAGATAGTC 51676 Query 62697 TCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTA-AGAG 62755 || ||||| | |||| |||| | ||| || || ||||| ||| | | || Sbjct 51675 TCGAAGATTTGAATATTGAGATGCTTTGCCTCAGGTGAGTCAAAAGGAACACGCAGAGCC 51616 Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 || ||| || ||||| ||||| || ||||||| | || || | ||| | || | Sbjct 51615 AAGAAA-GCATCCGCCAATCCCTGTACACCAACTGCAATGGGACGATGACGGAAGTT-GC 51558 Query 62816 GATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 || | || ||||| | || || || |||| ||| || || || || | || || Sbjct 51557 TCTTCCTTGCCTCTGGGACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGG 51498 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC-----TATT-A 62928 || |||| ||| || || | || || | || ||| | ||||| ||| | Sbjct 51497 TAACAACTTGGACGACTTCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCATATCCA 51438 Query 62929 CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCAT 62988 |||| || | ||||| ||| |||| || || || || ||||||| ||| | | Sbjct 51437 CAAAGGTGGGAAGTGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGT 51378 Query 62989 ATTGTATTATCTCAGTGCAAAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 ||| | ||||| ||||| | || |||| ||||||||| | || | || | Sbjct 51377 ATTCGACAATCTCTGTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGT 51321 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 | ||||| ||| ||||||||||| || || |||||||| | ||||| || | || | Sbjct 51320 TGCTCTTGCGGTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTG 51261 Query 63106 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC 63165 ||| | || | | ||||| | ||||||||| | | | | |||| | | Sbjct 51260 CTTCAAGGATGGAATACCAGAGCTTTTGAGCCTTTAC----GGTCTTTCGGCCCTTGCCC 51205 Query 63166 TTTCGTATAGAGTA----TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 | || | | | ||||| ||| ||||| ||||| | |||| | | | | Sbjct 51204 TCGCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCA 51145 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||| |||| |||||||||| | ||||||||||| | || || | ||||| ||| Sbjct 51144 GGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAG 51085 Query 63282 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||||| |||||||| | || ||| || ||||| | || | | |||||| || || Sbjct 51084 AGATCGGGAATCCACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATG 51026 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||||| | |||||||||||| | | | ||||| ||||| || || | ||| || || Sbjct 51025 ATTCTTTCTGAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGC 50966 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | ||||| || ||||| || || ||||| | ||||| || ||||| || |||| Sbjct 50965 AAAGGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAAC 50906 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | || |||||| | |||||| || || | ||| ||||| ||||| || ||| ||| | Sbjct 50905 ACGCAGCATTGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGT 50846 Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 || || || | || ||||| || || || || | || || || | || || Sbjct 50845 AGCTCGGATTCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACA 50786 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 | || | || |||||||| || || ||||| || || |||| | | || || || Sbjct 50785 TGTCTTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCA 50726 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 ||||| || ||| ||||| ||| | || | ||||||||||| || || || Sbjct 50725 TGATGACATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAA 50666 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 | || | || | | ||||| ||||| || || || || ||||| ||| || Sbjct 50665 GTACTTGTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGAT 50606 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || || || |||||||| | |||||| || || | ||||| | ||| || | Sbjct 50605 ACCAACAGCCACACGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACG 50546 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 63878 | | ||| || ||||| || || || |||||||| | ||| ||||| || || Sbjct 50545 GAGGAGGTATGAACGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGA 50488 Query 63879 TCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATA 63938 ||||| | ||| | |||||||||| ||| | ||| | || | || | ||| Sbjct 50487 TCGTAGACAATCGCTGAATTGAGCTCTGCCTCGTGTTTCATGAC-ACAT---TCGTATGT 50432 Query 63939 CT----TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63994 || || || || || || | || ||||| || |||||||| | | | | ||| Sbjct 50431 CTGTTGAGAGATCATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATC 50372 Query 63995 CTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTC 64053 || || || | ||| | || || || | |||||| ||||| || | ||| || | Sbjct 50371 TGAGATGAC-GGACGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATAC 50313 Query 64054 TGGCGGCTAGAATGGCATAATCCGGATG 64081 || || |||||||||||||| ||||| Sbjct 50312 GAGCCGCGAGAATGGCATAATCTGGATG 50285 >seq24 Length=853129 Score = 100 bits (110), Expect = 4e-16 Identities = 208/309 (67%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || || ||||| || || |||| || || | || || || ||||| || || Sbjct 483747 TCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATG 483806 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 ||||| || || |||||||| | ||||| | |||||||||||| || || || || Sbjct 483807 ATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCA 483866 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 | || || || || || || ||||| ||| || || ||||| | || || | | Sbjct 483867 ACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACA 483926 Query 34023 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCC 34079 || || || || ||||| |||||||| || | || ||| || || | ||| Sbjct 483927 AAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCA 483986 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 | |||||| | ||||| || || ||||||||||| |||||||| | |||||| | ||| Sbjct 483987 ATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCAGATCTGTTGA 484046 Query 34140 TATTGGATT 34148 | ||||| Sbjct 484047 GAGCGGATT 484055 Score = 93.3 bits (102), Expect = 5e-14 Identities = 288/440 (65%), Gaps = 8/440 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||| ||||| || || || || || || || || || || | | ||| ||||| Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200 Query 33351 TCCATGAAATCAAACGGATTGG-TAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 |||||||| || || || || | | || ||||| | ||| | | |||| || | Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAG-TATTTCTCGTTACCAAG--AGCCGT 483256 Query 33410 CAA---TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33466 ||| || ||| |||||||| || |||||| ||||| | | | ||||| || | Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316 Query 33467 GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 | | || |||||| | || | |||||||| ||||||| || || | || || Sbjct 483317 TAAGGCACAGGGGAGAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGAT 483376 Query 33527 AATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGC 33586 ||| || | | || || || | || || || ||| | | ||||| Sbjct 483377 GATATCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCATGC 483436 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 || ||| ||||| |||||||| | | || | ||||| ||||| || || || | Sbjct 483437 AAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACCAGC 483496 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||| ||||||||||| || |||||||| || | || || || || ||||| || || Sbjct 483497 CATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAATGCC 483556 Query 33707 TTCTACTGCAGCAAAGGCAA 33726 ||| || ||||| || |||| Sbjct 483557 TTCCACGGCAGCGAATGCAA 483576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813191276800