Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq73 143 2e-29
>seq73
Length=484926
Score = 143 bits (158), Expect = 2e-29
Identities = 396/605 (65%), Gaps = 4/605 (1%)
Strand=Plus/Minus
Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000
||| |||| || | ||||| || || ||||| || ||||||||| || | |||
Sbjct 51175 AAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGGACACATCAGGGTCCA 51116
Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060
||| | | ||| || || | | ||| || | ||| || | ||| || ||| || |
Sbjct 51115 CTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCATAGAAGAG 51056
Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120
||| | | | ||| || || || ||||||||| | || || ||||| |
Sbjct 51055 ATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGGAACTCGAAGAC 50996
Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180
||||||||||||||| || | || || | | || || || | || | ||| || ||
Sbjct 50995 ATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTG 50936
Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240
|| || |||||| ||||||| || | | | | ||| || || |||||||| ||
Sbjct 50935 ATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACAATACCATTCGAGAA 50876
Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCT 38298
||||| | ||||| || || | || ||||||| || | ||| || | ||
Sbjct 50875 ACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGTGGATATTGAGA--CCA 50818
Query 38299 ATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCT 38358
|| ||||| |||| || || || | ||| ||| || | |||||| | ||||| ||
Sbjct 50817 ATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCATAGATACCATCA 50758
Query 38359 ATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCG 38418
|| ||||| ||||| || || | || || ||||| |||| | || |||||
Sbjct 50757 ATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAGCCTGAGGGGTTCCA 50698
Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478
|| | || | ||||||||| |||||| |||| | || | ||||| | || |||||
Sbjct 50697 GCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGACATCAAGTTGTATGTC 50638
Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538
|| ||| | || ||||| |||| || ||||| | || || | ||| | ||| |||
Sbjct 50637 TCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACACGCATGATCATGTGT 50578
Query 38539 TGTGG 38543
|||||
Sbjct 50577 TGTGG 50573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468521520326400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |