Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq73 143 2e-29 >seq73 Length=484926 Score = 143 bits (158), Expect = 2e-29 Identities = 396/605 (65%), Gaps = 4/605 (1%) Strand=Plus/Minus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| |||| || | ||||| || || ||||| || ||||||||| || | ||| Sbjct 51175 AAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGGACACATCAGGGTCCA 51116 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 ||| | | ||| || || | | ||| || | ||| || | ||| || ||| || | Sbjct 51115 CTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCATAGAAGAG 51056 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 ||| | | | ||| || || || ||||||||| | || || ||||| | Sbjct 51055 ATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGGAACTCGAAGAC 50996 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 ||||||||||||||| || | || || | | || || || | || | ||| || || Sbjct 50995 ATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTG 50936 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || || |||||| ||||||| || | | | | ||| || || |||||||| || Sbjct 50935 ATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACAATACCATTCGAGAA 50876 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCT 38298 ||||| | ||||| || || | || ||||||| || | ||| || | || Sbjct 50875 ACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGTGGATATTGAGA--CCA 50818 Query 38299 ATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCT 38358 || ||||| |||| || || || | ||| ||| || | |||||| | ||||| || Sbjct 50817 ATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCATAGATACCATCA 50758 Query 38359 ATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCG 38418 || ||||| ||||| || || | || || ||||| |||| | || ||||| Sbjct 50757 ATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAGCCTGAGGGGTTCCA 50698 Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 || | || | ||||||||| |||||| |||| | || | ||||| | || ||||| Sbjct 50697 GCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGACATCAAGTTGTATGTC 50638 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 || ||| | || ||||| |||| || ||||| | || || | ||| | ||| ||| Sbjct 50637 TCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACACGCATGATCATGTGT 50578 Query 38539 TGTGG 38543 ||||| Sbjct 50577 TGTGG 50573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521520326400