Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq73 221 2e-52 seq24 102 1e-16 >seq73 Length=484926 Score = 221 bits (244), Expect = 2e-52 Identities = 750/1155 (65%), Gaps = 30/1155 (3%) Strand=Plus/Minus Query 65735 TGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 65794 ||||| ||| |||| || || || || ||||||| ||| | |||| | ||||| Sbjct 51424 TGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTC 51365 Query 65795 AGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 ||||| | || |||| ||| ||||| | || | || || ||||| ||| Sbjct 51364 TGTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 51308 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 ||||||||||| || || |||||||| | ||||| || | || | ||| | || | Sbjct 51307 GCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGA 51248 Query 65912 TTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT--ATAGT 65969 | ||||| | ||||||||| | | | | | || | || || ||| | Sbjct 51247 ATACCAGAGCTTTTGAGCCTTTAC----GGTCTTTCGGCCCTTGCCCTCGCGCTCATACT 51192 Query 65970 GTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 ||||| ||| ||||| ||||| | |||| | | |||||||| |||| | Sbjct 51191 TCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTG 51132 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 ||||||||| | ||||||||||| | || || | ||||| |||||||| ||||||| Sbjct 51131 GACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCC 51072 Query 66088 AAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 | | || ||| || | ||| | | | | |||||| || || ||||||| | ||| Sbjct 51071 ACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGA 51013 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206 ||||||||| | | | |||| ||||| || || | ||| || || | | ||||| Sbjct 51012 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGA 50953 Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266 || ||||| || || ||||| | ||||| || ||||| || |||| | || |||||| Sbjct 50952 CGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGC 50893 Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA 66326 | ||||||||| || ||| ||||| ||||| || ||| ||| | || || || | Sbjct 50892 ACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTG 50833 Query 66327 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 || ||||| || || || || | || || || | || ||| || | ||| Sbjct 50832 TGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTA 50773 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 |||||||| || || || || || ||| |||| | | || || || ||||| || Sbjct 50772 TCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGA 50713 Query 66447 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506 || ||||| ||| | || | ||||||||||| || || || | || | || Sbjct 50712 GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGAC 50653 Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 66566 | | ||||| ||||| || || || || ||||| ||| || || || || ||| Sbjct 50652 ATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACA 50593 Query 66567 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 66626 ||||| | |||||| || || | ||||| | ||| || | | | ||| || Sbjct 50592 CGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAA 50533 Query 66627 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 66684 ||||| || || || |||||||| | ||| ||||| || || ||||| | ||| Sbjct 50532 CGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCG 50475 Query 66685 CCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT----TGAAATA 66740 | || ||||| | ||| | ||| | || |||| | ||| || || || Sbjct 50474 CTGAATTGAGCTCTGCCTCGTGTTTCATGAC-ACAT---TCGTATGTCTGTTGAGAGATC 50419 Query 66741 ATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCA 66800 || || || | || ||||| || || ||||| | | | | ||| || || | Sbjct 50418 ATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC-GGA 50360 Query 66801 CTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAAT 66859 | | ||| | || || || | ||||| ||||| || ||||| || | ||| || | ||| Sbjct 50359 CGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAGAAT 50300 Query 66860 GGCATAATCCGGATG 66874 ||||||||| ||||| Sbjct 50299 GGCATAATCTGGATG 50285 >seq24 Length=853129 Score = 102 bits (112), Expect = 1e-16 Identities = 292/441 (66%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || ||||| ||||| || || || || || || || || ||||| | | ||| ||||| Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200 Query 35927 TCCATGAAATCGAATGGATT-GATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 |||||||| ||||| || || | | || || || | ||| | | |||| || | Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAG-TATTTCTCGTTACCAAG--AGCCGT 483256 Query 35986 CAA---TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA- 36041 ||| || ||| ||||| || || |||||| ||||| | | | ||||| || | Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316 Query 36042 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 36101 |||| | ||| ||||| | || | |||||||| ||||| | || || || || | Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375 Query 36102 TAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 36161 | ||| || | | || || || | | | || || ||| | | |||| Sbjct 483376 TGATATCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCATG 483435 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 | || ||| || || |||||||| | | || | ||||| ||||| || || || | Sbjct 483436 CAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACCAG 483495 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 36281 ||| ||||||||||| || |||||||| || | ||||| || ||| |||||||| | Sbjct 483496 CCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAATGC 483555 Query 36282 CTTCTACTGCCGCAAAGGCAA 36302 |||| || || || || |||| Sbjct 483556 CTTCCACGGCAGCGAATGCAA 483576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168192790400