Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq73 239 6e-58
seq24 100 4e-16
>seq73
Length=484926
Score = 239 bits (264), Expect = 6e-58
Identities = 757/1158 (65%), Gaps = 38/1158 (3%)
Strand=Plus/Minus
Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757
|||| ||| |||| || || || || ||||||| ||| | |||| | ||| ||
Sbjct 51423 GCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCT 51364
Query 71758 GTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814
||||| | || |||| ||| ||||| | || | || || ||||| |||
Sbjct 51363 GTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG 51307
Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874
||||||||||| || || || || || | ||||| || | || | ||| | || |
Sbjct 51306 CACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAA 51247
Query 71875 TTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTA-TTG 71930
| ||||| | ||||||||| | || | | ||| || | || || ||
Sbjct 51246 TACCAGAGCTTTTGAGCCTTTACGGTCTTTCGG---CCCTTGCCCTCGCGCTCATACTTC 51190
Query 71931 T-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989
| ||| | || | ||| ||||| ||||| | ||| ||| |||||||| ||||| |
Sbjct 51189 TCGTACA-AAGC-TTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTG 51132
Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049
||||||||| | ||||||||| | | | || | ||||| |||||||| |||||||
Sbjct 51131 GACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCC 51072
Query 72050 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108
| | || ||| || ||||| | | | | ||||| || || ||||||| | |||
Sbjct 51071 ACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGA 51013
Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168
||||||||| | | | ||||| ||||| || || | ||| || || | | || ||
Sbjct 51012 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGA 50953
Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228
|| ||||| || || ||||| | ||||| || ||||| || |||| | || ||||||
Sbjct 50952 CGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGC 50893
Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288
| ||||||||| || ||| ||||| ||||| || ||| ||| | || || || ||
Sbjct 50892 ACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTG 50833
Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348
|| ||||| || || || || | || || || | || ||| || | |||
Sbjct 50832 TGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTA 50773
Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408
|||||||| || || || || || ||| |||| | | || || || ||||| ||
Sbjct 50772 TCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGA 50713
Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468
|| ||||| ||| | || | ||||||||||| || || || | || | |||
Sbjct 50712 GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGAC 50653
Query 72469 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACA 72528
| | ||||| ||||| || || ||||| ||||| ||| || || || || |||
Sbjct 50652 ATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACA 50593
Query 72529 CGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGAT 72588
||||| | ||| || || || | ||||| | |||||| | | | ||| ||
Sbjct 50592 CGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAA 50533
Query 72589 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 72646
||||| || || || |||||||| | ||| ||||| || || ||||| | |||
Sbjct 50532 CGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCG 50475
Query 72647 CCGAATTGAGTTTATCCTTATATTTGTTAAC-------TATATCCATGGTGATACTTGAA 72699
| |||||||| | ||| | ||| | || ||| || || ||| ||
Sbjct 50474 CTGAATTGAGCTCTGCCTCGTGTTTCATGACACATTCGTATGTC--TGTTGA-----GAG 50422
Query 72700 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 72759
|| || || || | || ||||| || |||||||| | | | | ||| || ||
Sbjct 50421 ATCATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC- 50363
Query 72760 TCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 72818
|| | ||| | || || || | |||||| ||||| || ||||| || | || || ||
Sbjct 50362 GGACGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAG 50303
Query 72819 AATGGCATAATCTGGATG 72836
||||||||||||||||||
Sbjct 50302 AATGGCATAATCTGGATG 50285
>seq24
Length=853129
Score = 100 bits (110), Expect = 4e-16
Identities = 294/443 (66%), Gaps = 14/443 (3%)
Strand=Plus/Plus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|| ||||| ||||| || || || || || || || ||||| || | | ||| |||||
Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200
Query 41834 TCCATGAAATCAAACGGATTGG-TAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892
|||||||| || || || || | | || || || | ||| | | |||| || |
Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAG-TATTTCTCGTTACCAAG--AGCCGT 483256
Query 41893 CAA---TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA- 41948
||| || ||| |||| ||| || |||||| ||||| | | | ||||| || |
Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316
Query 41949 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 42008
|||| | ||| ||||| | || | |||||||| ||||| | || || || || |
Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375
Query 42009 TAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 42066
| ||| || | || | | || || || | | | || || ||| | | ||
Sbjct 483376 TGATA--TCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCA 483433
Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126
||| || ||| ||||| ||||| || | | || | ||||| ||||| || || ||
Sbjct 483434 TGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACC 483493
Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186
| ||| ||||||||||| || |||||||| |||| ||||| || ||| ||||| ||
Sbjct 483494 AGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAAT 483553
Query 42187 TCCTTCTACTGCCGCAAAGGCAA 42209
||||| || || || || ||||
Sbjct 483554 GCCTTCCACGGCAGCGAATGCAA 483576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671134502025600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |