Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq73 239 6e-58 seq24 100 4e-16 >seq73 Length=484926 Score = 239 bits (264), Expect = 6e-58 Identities = 757/1158 (65%), Gaps = 38/1158 (3%) Strand=Plus/Minus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| ||| |||| || || || || ||||||| ||| | |||| | ||| || Sbjct 51423 GCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCT 51364 Query 71758 GTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 ||||| | || |||| ||| ||||| | || | || || ||||| ||| Sbjct 51363 GTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG 51307 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 ||||||||||| || || || || || | ||||| || | || | ||| | || | Sbjct 51306 CACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAA 51247 Query 71875 TTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTA-TTG 71930 | ||||| | ||||||||| | || | | ||| || | || || || Sbjct 51246 TACCAGAGCTTTTGAGCCTTTACGGTCTTTCGG---CCCTTGCCCTCGCGCTCATACTTC 51190 Query 71931 T-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 | ||| | || | ||| ||||| ||||| | ||| ||| |||||||| ||||| | Sbjct 51189 TCGTACA-AAGC-TTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTG 51132 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 ||||||||| | ||||||||| | | | || | ||||| |||||||| ||||||| Sbjct 51131 GACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCC 51072 Query 72050 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 | | || ||| || ||||| | | | | ||||| || || ||||||| | ||| Sbjct 51071 ACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGA 51013 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 ||||||||| | | | ||||| ||||| || || | ||| || || | | || || Sbjct 51012 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGA 50953 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || ||||| || || ||||| | ||||| || ||||| || |||| | || |||||| Sbjct 50952 CGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGC 50893 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288 | ||||||||| || ||| ||||| ||||| || ||| ||| | || || || || Sbjct 50892 ACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTG 50833 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 || ||||| || || || || | || || || | || ||| || | ||| Sbjct 50832 TGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTA 50773 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408 |||||||| || || || || || ||| |||| | | || || || ||||| || Sbjct 50772 TCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGA 50713 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 || ||||| ||| | || | ||||||||||| || || || | || | ||| Sbjct 50712 GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGAC 50653 Query 72469 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACA 72528 | | ||||| ||||| || || ||||| ||||| ||| || || || || ||| Sbjct 50652 ATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACA 50593 Query 72529 CGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGAT 72588 ||||| | ||| || || || | ||||| | |||||| | | | ||| || Sbjct 50592 CGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAA 50533 Query 72589 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 72646 ||||| || || || |||||||| | ||| ||||| || || ||||| | ||| Sbjct 50532 CGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCG 50475 Query 72647 CCGAATTGAGTTTATCCTTATATTTGTTAAC-------TATATCCATGGTGATACTTGAA 72699 | |||||||| | ||| | ||| | || ||| || || ||| || Sbjct 50474 CTGAATTGAGCTCTGCCTCGTGTTTCATGACACATTCGTATGTC--TGTTGA-----GAG 50422 Query 72700 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 72759 || || || || | || ||||| || |||||||| | | | | ||| || || Sbjct 50421 ATCATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC- 50363 Query 72760 TCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 72818 || | ||| | || || || | |||||| ||||| || ||||| || | || || || Sbjct 50362 GGACGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAG 50303 Query 72819 AATGGCATAATCTGGATG 72836 |||||||||||||||||| Sbjct 50302 AATGGCATAATCTGGATG 50285 >seq24 Length=853129 Score = 100 bits (110), Expect = 4e-16 Identities = 294/443 (66%), Gaps = 14/443 (3%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| ||||| || || || || || || || ||||| || | | ||| ||||| Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200 Query 41834 TCCATGAAATCAAACGGATTGG-TAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 |||||||| || || || || | | || || || | ||| | | |||| || | Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAG-TATTTCTCGTTACCAAG--AGCCGT 483256 Query 41893 CAA---TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA- 41948 ||| || ||| |||| ||| || |||||| ||||| | | | ||||| || | Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316 Query 41949 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 42008 |||| | ||| ||||| | || | |||||||| ||||| | || || || || | Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375 Query 42009 TAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 42066 | ||| || | || | | || || || | | | || || ||| | | || Sbjct 483376 TGATA--TCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCA 483433 Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 ||| || ||| ||||| ||||| || | | || | ||||| ||||| || || || Sbjct 483434 TGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACC 483493 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 | ||| ||||||||||| || |||||||| |||| ||||| || ||| ||||| || Sbjct 483494 AGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAAT 483553 Query 42187 TCCTTCTACTGCCGCAAAGGCAA 42209 ||||| || || || || |||| Sbjct 483554 GCCTTCCACGGCAGCGAATGCAA 483576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134502025600