Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq51 113 7e-21
seq19 104 4e-18
>seq51
Length=690855
Score = 113 bits (124), Expect = 7e-21
Identities = 87/101 (86%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || || | ||| |||||| || |||||||| || |||||||||||||||||
Sbjct 199005 GCCAAGCGCCACCGTAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCAGCTAT 198947
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||||||||| ||||||||| ||||||
Sbjct 198946 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 198906
Score = 100 bits (110), Expect = 4e-17
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 16527 TCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTA 16586
||||| | || |||| ||||||| |||| ||| | |||| |||||| || || |
Sbjct 198853 TCTCTCCAGTGATCTACGAAGAGACCCGTGGTGTCCTTAAGACCTTCCTTGAGGGTGTCA 198794
Query 16587 TCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATA 16646
||| ||||||| || ||| || || ||||| || || ||||||||||| || | |||
Sbjct 198793 TCCGTGATGCTGTCACCTACACTGAACACGCCAAGCGCAAGACTGTCACATCTCTCGATG 198734
Query 16647 TCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| |||||||| | || || |||||||||| | || ||||| || |||||
Sbjct 198733 TTGTCTATGCCCTCAAGCGCCAAGGCCGTACCCTCTACGGTTTCGGTGGTTAA 198681
>seq19
Length=878005
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| ||||||| ||| |||||| || ||||| || || || || ||||| |||||
Sbjct 569763 GCCAAGCGCCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATTACTAAGCCCGCTAT 569821
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|| |||||||||||||||||||| ||||||||| ||||||
Sbjct 569822 TCGCCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 569862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074687988080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |