Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq73 244 1e-59
seq24 111 2e-19
>seq73
Length=484926
Score = 244 bits (270), Expect = 1e-59
Identities = 755/1157 (65%), Gaps = 36/1157 (3%)
Strand=Plus/Minus
Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951
|||| ||| |||| || || || || ||||||| ||| | |||| | |||||
Sbjct 51423 GCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCT 51364
Query 62952 GTGCAAAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63008
||||| | || |||| ||||||||| | || | || || ||||| |||
Sbjct 51363 GTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG 51307
Query 63009 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63068
||||||||||| || || |||||||| | ||||| || | || | ||| | || |
Sbjct 51306 CACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAA 51247
Query 63069 TTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGT--ATAGTG 63126
| ||||| | ||||||||| | | | | |||| | || || ||| |
Sbjct 51246 TACCAGAGCTTTTGAGCCTTTAC----GGTCTTTCGGCCCTTGCCCTCGCGCTCATACTT 51191
Query 63127 TA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 63184
||||| ||| ||||| ||||| | |||| | | |||||||| |||| ||
Sbjct 51190 CTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGG 51131
Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63244
|||||||| | ||||||||||| | || || | ||||| |||||||| ||||||||
Sbjct 51130 ACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCA 51071
Query 63245 AAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303
| || ||| || ||||| | | | | |||||| || || ||||||| | ||||
Sbjct 51070 CAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGAT 51012
Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363
|||||||| | | | ||||| ||||| || || | ||| || || | | ||||| |
Sbjct 51011 CGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGAC 50952
Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423
| ||||| || || ||||| | ||||| || ||||| || |||| | || |||||| |
Sbjct 50951 GCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCA 50892
Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC 63483
|||||| || || | ||| ||||| ||||| || ||| ||| | || || || |
Sbjct 50891 CAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGT 50832
Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543
|| ||||| || || || || | || || || | || ||| || | || |
Sbjct 50831 GGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTAT 50772
Query 63544 CATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63603
|||||||||| || ||||| || || |||| | | || || || ||||| ||
Sbjct 50771 CATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAG 50712
Query 63604 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63663
|| ||||| ||| | || | ||||||||||| || || || | || | || |
Sbjct 50711 CCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGACA 50652
Query 63664 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63723
| ||||| ||||| || || || || ||||| ||| || || || || ||||
Sbjct 50651 TCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACAC 50592
Query 63724 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATT 63783
|||| | |||||| || || | ||||| | ||| || | | | ||| ||
Sbjct 50591 GCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAAC 50532
Query 63784 TTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAAC 63841
||||| || || || |||||||| | ||| ||||| || || ||||| | ||| |
Sbjct 50531 GCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCGC 50474
Query 63842 CGAGTTGAGTTTATCCTTATATTTGTTAAC-------TATATCCATGGTGATACTTGAAA 63894
|| ||||| | ||| | ||| | || ||| || || ||| || |
Sbjct 50473 TGAATTGAGCTCTGCCTCGTGTTTCATGACACATTCGTATGTC--TGTTGA-----GAGA 50421
Query 63895 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 63954
| || || || | || ||||| || |||||||| | | | | ||| || ||
Sbjct 50420 TCATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC-G 50362
Query 63955 CACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 64013
|| | ||| | || || || | |||||| ||||| || ||||| || | || || |||
Sbjct 50361 GACGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAGA 50302
Query 64014 ATGGCATAATCCGGATG 64030
||||||||||| |||||
Sbjct 50301 ATGGCATAATCTGGATG 50285
>seq24
Length=853129
Score = 111 bits (122), Expect = 2e-19
Identities = 294/441 (67%), Gaps = 10/441 (2%)
Strand=Plus/Plus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
|| ||||| ||||| || || || || || || || || || || | | ||| |||||
Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200
Query 33073 TCCATGAAATCAAACGGATTGG-TAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131
|||||||| || || || || | | || || || | ||| | | |||| || |
Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAG-TATTTCTCGTTACCAAG--AGCCGT 483256
Query 33132 CAA---TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA- 33187
||| || ||| |||||||| || |||||| ||||| | | | ||||| || |
Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316
Query 33188 TAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 33247
|||| | ||| ||||| | || | |||||||| ||||||| || || || || |
Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375
Query 33248 TAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 33307
| ||| || | | || || || | ||| || || ||| | | ||||
Sbjct 483376 TGATATCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCATG 483435
Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367
| || ||| ||||| |||||||| | | || || ||||| ||||| || || || |
Sbjct 483436 CAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACCAG 483495
Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427
||| ||||||||||| || |||||||| || | || || || ||| ||||| || |
Sbjct 483496 CCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAATGC 483555
Query 33428 CTTCTACTGCAGCAAAGGCAA 33448
|||| || ||||| || ||||
Sbjct 483556 CTTCCACGGCAGCGAATGCAA 483576
Score = 95.1 bits (104), Expect = 2e-14
Identities = 197/293 (67%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624
|| || ||||| || || |||| || || | || || || ||||| || ||
Sbjct 483747 TCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATG 483806
Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684
||||| || || |||||||| | ||||| | |||||| ||||| || || || ||
Sbjct 483807 ATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCA 483866
Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744
|||| || || || || || || || ||| || || ||||| | || || | |
Sbjct 483867 ACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACA 483926
Query 33745 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCT 33801
|| || || || ||||| |||||||| || | || ||| || || | |||
Sbjct 483927 AAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCA 483986
Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
| |||||| | ||||| || || ||||||||||| |||||||| | ||||||
Sbjct 483987 ATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCAGAT 484039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622942839369600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |