Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq73 244 1e-59 seq24 111 2e-19 >seq73 Length=484926 Score = 244 bits (270), Expect = 1e-59 Identities = 755/1157 (65%), Gaps = 36/1157 (3%) Strand=Plus/Minus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| ||| |||| || || || || ||||||| ||| | |||| | ||||| Sbjct 51423 GCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCT 51364 Query 62952 GTGCAAAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63008 ||||| | || |||| ||||||||| | || | || || ||||| ||| Sbjct 51363 GTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG 51307 Query 63009 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63068 ||||||||||| || || |||||||| | ||||| || | || | ||| | || | Sbjct 51306 CACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAA 51247 Query 63069 TTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGT--ATAGTG 63126 | ||||| | ||||||||| | | | | |||| | || || ||| | Sbjct 51246 TACCAGAGCTTTTGAGCCTTTAC----GGTCTTTCGGCCCTTGCCCTCGCGCTCATACTT 51191 Query 63127 TA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 63184 ||||| ||| ||||| ||||| | |||| | | |||||||| |||| || Sbjct 51190 CTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGG 51131 Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63244 |||||||| | ||||||||||| | || || | ||||| |||||||| |||||||| Sbjct 51130 ACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCA 51071 Query 63245 AAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 | || ||| || ||||| | | | | |||||| || || ||||||| | |||| Sbjct 51070 CAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGAT 51012 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 |||||||| | | | ||||| ||||| || || | ||| || || | | ||||| | Sbjct 51011 CGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGAC 50952 Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423 | ||||| || || ||||| | ||||| || ||||| || |||| | || |||||| | Sbjct 50951 GCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCA 50892 Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC 63483 |||||| || || | ||| ||||| ||||| || ||| ||| | || || || | Sbjct 50891 CAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGT 50832 Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543 || ||||| || || || || | || || || | || ||| || | || | Sbjct 50831 GGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTAT 50772 Query 63544 CATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63603 |||||||||| || ||||| || || |||| | | || || || ||||| || Sbjct 50771 CATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAG 50712 Query 63604 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63663 || ||||| ||| | || | ||||||||||| || || || | || | || | Sbjct 50711 CCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGACA 50652 Query 63664 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63723 | ||||| ||||| || || || || ||||| ||| || || || || |||| Sbjct 50651 TCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACAC 50592 Query 63724 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATT 63783 |||| | |||||| || || | ||||| | ||| || | | | ||| || Sbjct 50591 GCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAAC 50532 Query 63784 TTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAAC 63841 ||||| || || || |||||||| | ||| ||||| || || ||||| | ||| | Sbjct 50531 GCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCGC 50474 Query 63842 CGAGTTGAGTTTATCCTTATATTTGTTAAC-------TATATCCATGGTGATACTTGAAA 63894 || ||||| | ||| | ||| | || ||| || || ||| || | Sbjct 50473 TGAATTGAGCTCTGCCTCGTGTTTCATGACACATTCGTATGTC--TGTTGA-----GAGA 50421 Query 63895 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 63954 | || || || | || ||||| || |||||||| | | | | ||| || || Sbjct 50420 TCATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC-G 50362 Query 63955 CACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 64013 || | ||| | || || || | |||||| ||||| || ||||| || | || || ||| Sbjct 50361 GACGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAGA 50302 Query 64014 ATGGCATAATCCGGATG 64030 ||||||||||| ||||| Sbjct 50301 ATGGCATAATCTGGATG 50285 >seq24 Length=853129 Score = 111 bits (122), Expect = 2e-19 Identities = 294/441 (67%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| ||||| || || || || || || || || || || | | ||| ||||| Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200 Query 33073 TCCATGAAATCAAACGGATTGG-TAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||||| || || || || | | || || || | ||| | | |||| || | Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAG-TATTTCTCGTTACCAAG--AGCCGT 483256 Query 33132 CAA---TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA- 33187 ||| || ||| |||||||| || |||||| ||||| | | | ||||| || | Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316 Query 33188 TAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 33247 |||| | ||| ||||| | || | |||||||| ||||||| || || || || | Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375 Query 33248 TAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 33307 | ||| || | | || || || | ||| || || ||| | | |||| Sbjct 483376 TGATATCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCATG 483435 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 | || ||| ||||| |||||||| | | || || ||||| ||||| || || || | Sbjct 483436 CAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACCAG 483495 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427 ||| ||||||||||| || |||||||| || | || || || ||| ||||| || | Sbjct 483496 CCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAATGC 483555 Query 33428 CTTCTACTGCAGCAAAGGCAA 33448 |||| || ||||| || |||| Sbjct 483556 CTTCCACGGCAGCGAATGCAA 483576 Score = 95.1 bits (104), Expect = 2e-14 Identities = 197/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || || ||||| || || |||| || || | || || || ||||| || || Sbjct 483747 TCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATG 483806 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||| || || |||||||| | ||||| | |||||| ||||| || || || || Sbjct 483807 ATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCA 483866 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 |||| || || || || || || || ||| || || ||||| | || || | | Sbjct 483867 ACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACA 483926 Query 33745 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCT 33801 || || || || ||||| |||||||| || | || ||| || || | ||| Sbjct 483927 AAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCA 483986 Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | |||||| | ||||| || || ||||||||||| |||||||| | |||||| Sbjct 483987 ATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCAGAT 484039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942839369600