Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq73 405 1e-107
seq24 107 5e-18
>seq73
Length=484926
Score = 405 bits (448), Expect = 1e-107
Identities = 1170/1776 (66%), Gaps = 41/1776 (2%)
Strand=Plus/Plus
Query 363386 ATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTG 363445
||||||| |||| ||||| ||||| || ||||| ||| | ||| | | |
Sbjct 50506 ATATTTT-GGATTCAAGACATTGGAGCGTTCATACCTCCTCCGTCTTAATAACGCCGTGG 50564
Query 363446 TTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505
|||| ||||| || || ||| | |||||||| ||| ||||||||||| || ||| |||
Sbjct 50565 TTGAGCGCCCACAACACATGATCATGCGTGTGGCTGTTGGTATCCATGGCGAAGATATTG 50624
Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCC 363563
| |||| || || ||||| || ||| | || | | ||| ||||| || || | ||
Sbjct 50625 AATCCGCAATCGAGACATACAA-CTTG-ATGTCGAACAAGTACTTCACACATGCTTCTCC 50682
Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623
||| | | || ||||||||| | | | | |||||||| || ||||| || || | ||
Sbjct 50683 TACACTCTTCAGTGCTGGAACCCCTCAGGCTCAGATGTCATCATGCTTCCTCGTAGATAT 50742
Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683
|||||| || ||| || ||||||| ||| || || |||| |||||| | ||||| ||
Sbjct 50743 GAAGGAAGACAGCATTGATGGTATCTATGATACCCTGAAGACATGTGCTATGATTTCGAA 50802
Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTC 363742
|||||| || || |||||| | ||||||| | || || || | | ||||||
Sbjct 50803 GAATGCCGGTGGCATTGGTCTCAATATCCACAGAATCCGAGCTACTGG-CTCCTACATTT 50861
Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802
|||||| || | ||||||||| | || || ||||| ||||| || |||| || |
Sbjct 50862 CCGGCACCAACGGTTTCTCGAATGGTATTGTGCCAATGCTGCGTGTTTTCAACAACACAG 50921
Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862
| || || || || || ||||| ||||| || || |||||||| || || ||||
Sbjct 50922 CCAGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACCTTGAGC 50981
Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922
| || || ||| | || ||||| || || ||| | || || || || ||||||
Sbjct 50982 CATGGCACGCTGATGTCTTCGAGTTCCTCGATCTCAGAAAGAATCATGGTAAGGAGGAAG 51041
Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982
| |||||||| ||||| |||||||| | ||| || | || | || |||||| | || |
Sbjct 51042 TTCGTGCACGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTG 51101
Query 363983 AGGCAGGTAA--GA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039
|| | || || | ||| | || | || ||| | || ||||| ||||| | ||||
Sbjct 51102 AGAAA---AACGGAGAGTGGACCCTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATG 51158
Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTA 364099
| | || || || | || ||| | ||||| |||||||| ||||| |||| || |
Sbjct 51159 TCTACGGAGATGAGTTTGAAGCTTTGTACGAGAAGTATGAGCGCGAGGGCAAGGGCCGAA 51218
Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159
|||| | || || ||||| |||| | ||||| | || | || | ||||| ||||
Sbjct 51219 AGACCGTAAAGGCTCAAAAGCTCTGGTATTCCATCCTTGAAGCACAAACCGAGACTGGAA 51278
Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219
|| | ||| | ||||| ||| |||||||||||||| ||||||| || |||| || |
Sbjct 51279 ACCCATTCATGCTCTACAAGGATGCGTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 51338
Query 364220 CAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278
| | || | || |||| | || || |||||| | |||||| | || | || ||| |
Sbjct 51339 CTA-TCCGTAGCTCCAACTTGTGCACAGAGATTGTCGAATACTCATCTGCGGATGAGGTT 51397
Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACT 364332
|| || || ||| | || || || || ||||| | |||| | || |||| |||
Sbjct 51398 GCTGTCTGCAACTTGGCCTCTATTGCACTTCCCACCTTTGTGGATATGAACAATGGGACT 51457
Query 364333 TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTT 364392
| |||| |||| | ||| | || || | | || ||| || | ||||| |
Sbjct 51458 TATGACTTCCAGAAGCTTCACGAAGTCGTCCAAGTTGTTACCAAGAACTTGAACAAGATC 51517
Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCG 364452
||||| || || || || | || || || | || | |||||||| ||
Sbjct 51518 ATCGATGTTAACTACTACCCCGTCCCAGAGGCAAGGAAGAGCAACTTCCGTCATCGTCCC 51577
Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG--GCATTTG 364510
|||| ||||||||||||| | || || | ||| || |||| || | ||||
Sbjct 51578 ATTGCAGTTGGTGTACAGGGATTGGCGGATGCTTTCTTG--GCTCTGCGTGTTCCTTTTG 51635
Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570
| || ||||| || ||| |||| | ||||| || || || || | ||
Sbjct 51636 ACTCACCTGAGGCAAAGCATCTCAATATTCAAATCTTCGAGACTATCTACCACGGTGCTC 51695
Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630
| |||||||| || | || || | || || ||| || ||||| || ||||
Sbjct 51696 TTACTGCTTCCGTAGAGCTTGCCAAGATTAATGGCCCGTATGAGACATATGAAGGATCCC 51755
Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690
|| ||| | ||| | | || | |||| | ||| ||||| || | | | |||
Sbjct 51756 CTGCGTCGAAAGGAGAGCTTCAATATGATATGTGGGGAGTCACTCCTACAGATCTCTGGG 51815
Query 364691 ACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC--TC-CCTCGT 364745
| ||||||| ||| | | | | | ||| | ||||| | |||||| || || ||
Sbjct 51816 ATTGGGATA-GCTTGAAGCAGC-AGATCAAGCAACATGGCATCCGCAACAGTCTTCTGGT 51873
Query 364746 TACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGA 364805
| || || ||||| || || ||| |||||||| || |||||||||||| ||
Sbjct 51874 T---GCTCCTATGCCAACTGCCAGCACTAGCCAGATCCTTGGTTTCAACGAGTGCTTTGA 51930
Query 364806 ACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA 364865
|| | || ||| |||| || ||||| || ||| | ||||| || | ||| || ||
Sbjct 51931 GCCATACACCTCCAACATTTACTCCCGCCGTGTGCTTGCAGGAGAGTTCCAGGTGGTGAA 51990
Query 364866 TAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA 364925
| || ||||||||||| ||| || || ||| ||||| ||||||||||
Sbjct 51991 CCCTTGGCTTCTCAAGGATCTTGTCGATATGGGACTCTGGTCTGACAACATGAAGAACCG 52050
Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985
|| ||||| | | |||||| | ||||| ||||| | ||| |||| | ||| |
Sbjct 52051 CATTATCGCTGATGGTGGTTCCATCCAGAATATTCCCAACATCCCATCAGATATTAAGGC 52110
Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG---ATATGGCGGCCGA 365042
| | ||||| ||||| ||||| ||||| ||| | ||||| | ||||| || ||
Sbjct 52111 TCTCTACAAGACCGTCTGGGAGATTTCTCAGCG---TAACATTGTGCAGATGGCTGCTGA 52167
Query 365043 TCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTC 365102
|| |||||||| || |||| |||||| | ||| | ||||| | || |||
Sbjct 52168 CCGTGGTGCTTTCATTGATCAGTCCCAGTCAATGAACATTCACATGAAGGACCCCACCAT 52227
Query 365103 CGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138
| |||| | ||| |||||||||| || |||||
Sbjct 52228 GGGCAAGATCACAAGCATGCATTTCACTGGCTGGAA 52263
>seq24
Length=853129
Score = 107 bits (118), Expect = 5e-18
Identities = 161/224 (72%), Gaps = 5/224 (2%)
Strand=Plus/Minus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATG-AACA-ATGAACGTTCA--TTCGC 22487
|| ||||| ||||| |||||||| | | |||||| || | | ||| || || |||||
Sbjct 483646 ATCAAGAAGAAGGCCGATTGGGCAGTTAGATGGATTCAAGACAAGAA-GTCCACCTTCGC 483588
Query 22488 GGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGC 22547
||||| | ||||||| |||| || |||||||||||||| ||| | ||| ||
Sbjct 483587 CCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCATTTTCTTCAGTGGTTCTTTTGCAGC 483528
Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607
||||||||||| || || |||| | ||| | ||||| || ||||| || ||| | ||
Sbjct 483527 TATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTGGTCTGACCTTTTCGAACGAGCTCAT 483468
Query 22608 TAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTAT 22651
|| || ||||| || |||||||| ||||| || | ||||
Sbjct 483467 CTCTCGTGACGAGGGCCTGCATACCGACTTTGCATGCCTTCTAT 483424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303344248437920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |