Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq391 140 2e-28 seq284 140 2e-28 seq275 140 2e-28 seq493 111 1e-19 seq53 91.5 1e-13 seq46 87.8 1e-12 >seq391 Length=804 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 685 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 744 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 745 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 779 >seq284 Length=3082 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1875 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1934 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1935 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1969 >seq275 Length=7890 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3965 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4024 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4025 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4059 >seq493 Length=534 Score = 111 bits (122), Expect = 1e-19 Identities = 72/79 (91%), Gaps = 4/79 (5%) Strand=Plus/Minus Query 25917 GCTGTGGTTTCGCTAGATAGTAGATAGGG----GGTAATCTCGTTAATCCTTTCATGCGC 25972 |||||||||||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct 534 GCTGTGGTTTCGCTAGATAGTAGATAGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 475 Query 25973 GTCACTAATTAGATGACGA 25991 ||||||||||||||||||| Sbjct 474 GTCACTAATTAGATGACGA 456 >seq53 Length=180304 Score = 91.5 bits (100), Expect = 1e-13 Identities = 170/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 6238 TCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGG 6297 ||||||| || || ||||| || || |||||||||||||| || |||||| || Sbjct 160992 TCGAGGGGAAAGGCAACGGCATCAAGACCGTCATTGTCAATTTGAGCAGCGTCGCTCAGT 160933 Query 6298 CGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGA 6357 | || | ||||||| | | || | || || ||||| | |||||||| ||||||| Sbjct 160932 CTCTGGCTCGCCCTGGCGCTTATGTCATCAAGTACTTCGGATTTGAACTTGGTGCTCAGA 160873 Query 6358 CGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGC 6417 | | ||| |||| |||| ||| ||||||| | ||| | || |||| | Sbjct 160872 CCAACACCAATCCTGCTGACGATCGCTGGATCATTAACGGTGCTCATGAAGCTTCCAAAC 160813 Query 6418 TGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACC 6477 | ||||||| || || ||||| || |||||| || || || | ||| | |||| Sbjct 160812 TCCAGGACTATCTCGATGGCTTCATCACCAAGTTCGTCCTTTGCAAAAAGTGCAAGAACC 160753 Query 6478 CGGAGACCGA 6487 |||||||||| Sbjct 160752 CGGAGACCGA 160743 >seq46 Length=1090308 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || ||||||||||||||||| || ||||| || Sbjct 104299 TACCACCACGGAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGC 104358 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | || || || || || || || || ||||| || | | Sbjct 104359 TCAAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTG 104418 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTC 38266 ||| || || || || ||| || |||||| || | || || || | || || Sbjct 104419 GGATACCCTCCTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGAC--TC 104476 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || ||||| || ||||| || | || || ||||| || ||||| Sbjct 104477 AACTTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944913985360