Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq73 230 3e-55
seq24 104 3e-17
>seq73
Length=484926
Score = 230 bits (254), Expect = 3e-55
Identities = 752/1155 (65%), Gaps = 30/1155 (3%)
Strand=Plus/Minus
Query 62746 TGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62805
||||| ||| |||| || || || || ||||||| ||| | |||| | |||||
Sbjct 51424 TGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTC 51365
Query 62806 AGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 62862
||||| | || |||| ||| ||||| | || | || || ||||| |||
Sbjct 51364 TGTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 51308
Query 62863 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 62922
||||||||||| || || |||||||| | ||||| || | || | ||| | || |
Sbjct 51307 GCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGA 51248
Query 62923 TTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT--ATAGT 62980
| ||||| | ||||||||| | | | | | || | || || ||| |
Sbjct 51247 ATACCAGAGCTTTTGAGCCTTTAC----GGTCTTTCGGCCCTTGCCCTCGCGCTCATACT 51192
Query 62981 GTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038
||||| ||| ||||| ||||| | |||| | || |||||||| |||| |
Sbjct 51191 TCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTG 51132
Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098
||||||||| | ||||||||||| | || || | ||||| |||||||| |||||||
Sbjct 51131 GACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCC 51072
Query 63099 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63157
| | || ||| || ||||| | | | | |||||| || || ||||||| | |||
Sbjct 51071 ACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGA 51013
Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217
||||||||| | | | ||||| ||||| || || | ||| || || | | |||||
Sbjct 51012 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGA 50953
Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277
|| ||||| || || ||||| | ||||| || ||||| || |||| | || ||||||
Sbjct 50952 CGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGC 50893
Query 63278 ATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA 63337
| ||||||||| || ||| ||||| || || || ||| ||| | || || || |
Sbjct 50892 ACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTG 50833
Query 63338 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 63397
|| ||||| || || || || | || || || | || ||| || | |||
Sbjct 50832 TGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTA 50773
Query 63398 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63457
|||||||| || || || || || ||| |||| | | || || || ||||| ||
Sbjct 50772 TCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGA 50713
Query 63458 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAA 63517
|| ||||| ||| | || | ||||||||||| || || || | || | ||
Sbjct 50712 GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGAC 50653
Query 63518 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 63577
| | ||||| ||||| || || || || ||||| ||| || || || || |||
Sbjct 50652 ATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACA 50593
Query 63578 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63637
||||| | |||||| || || | ||||| | ||| || | | | ||| ||
Sbjct 50592 CGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAA 50533
Query 63638 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 63695
||||| || || || |||||||| | ||| ||||| || || ||||| | |||
Sbjct 50532 CGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCG 50475
Query 63696 CCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT----TGAAATA 63751
| || ||||| | ||| | ||| | || |||| | ||| || || ||
Sbjct 50474 CTGAATTGAGCTCTGCCTCGTGTTTCATGAC-ACAT---TCGTATGTCTGTTGAGAGATC 50419
Query 63752 ATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCA 63811
|| || | | || ||||| || || ||||| | | | | ||| || || |
Sbjct 50418 ATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC-GGA 50360
Query 63812 CTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 63870
| | ||| | || || || | ||||| ||||| || ||||| || | ||| || |||||
Sbjct 50359 CGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAGAAT 50300
Query 63871 GGCATAATCCGGATG 63885
||||||||| |||||
Sbjct 50299 GGCATAATCTGGATG 50285
>seq24
Length=853129
Score = 104 bits (114), Expect = 3e-17
Identities = 295/443 (67%), Gaps = 14/443 (3%)
Strand=Plus/Plus
Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429
|| ||||| ||||| || || || || || || || || ||||| | | ||| |||||
Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200
Query 32430 TCCATGAAATCGAATGGATTGG-TAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488
|||||||| ||||| || || | | || || || | ||| | | |||| || |
Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAG-TATTTCTCGTTACCAAG--AGCCGT 483256
Query 32489 CAA---TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA- 32544
||| || ||| ||||| || || |||||| ||||| | | | ||||| || |
Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316
Query 32545 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 32604
|||| | ||| ||||| | || | |||||||| ||||| | || || || || |
Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375
Query 32605 TAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 32662
| ||| || | || | | || || || | | | || || ||| | | ||
Sbjct 483376 TGATA--TCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCA 483433
Query 32663 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 32722
||| || ||| || || |||||||| | | || | ||||| ||||| || || ||
Sbjct 483434 TGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACC 483493
Query 32723 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 32782
| ||| ||||||||||| || |||||||| || | ||||| || ||| ||||||||
Sbjct 483494 AGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAAT 483553
Query 32783 TCCTTCTACTGCCGCAAAGGCAA 32805
||||| || || || || ||||
Sbjct 483554 GCCTTCCACGGCAGCGAATGCAA 483576
Score = 86.0 bits (94), Expect = 8e-12
Identities = 195/293 (67%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981
|| || ||||| || ||||||| || || | || || || ||||| || ||
Sbjct 483747 TCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATG 483806
Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041
|| || || || ||||| || | ||||| | |||||| ||||| || || || ||
Sbjct 483807 ATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCA 483866
Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101
| || || || || || || || || ||| || || ||||| | || || | |
Sbjct 483867 ACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACA 483926
Query 33102 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCC 33158
|| || || || ||||| |||||||| || | || ||| || || | |||
Sbjct 483927 AAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCA 483986
Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
| |||||| | ||||| || || ||||||||||| |||||||| | ||||||
Sbjct 483987 ATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCAGAT 484039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633627564576000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |