Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq73 230 3e-55 seq24 104 3e-17 >seq73 Length=484926 Score = 230 bits (254), Expect = 3e-55 Identities = 752/1155 (65%), Gaps = 30/1155 (3%) Strand=Plus/Minus Query 62746 TGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62805 ||||| ||| |||| || || || || ||||||| ||| | |||| | ||||| Sbjct 51424 TGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTC 51365 Query 62806 AGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 62862 ||||| | || |||| ||| ||||| | || | || || ||||| ||| Sbjct 51364 TGTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 51308 Query 62863 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 62922 ||||||||||| || || |||||||| | ||||| || | || | ||| | || | Sbjct 51307 GCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGA 51248 Query 62923 TTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT--ATAGT 62980 | ||||| | ||||||||| | | | | | || | || || ||| | Sbjct 51247 ATACCAGAGCTTTTGAGCCTTTAC----GGTCTTTCGGCCCTTGCCCTCGCGCTCATACT 51192 Query 62981 GTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038 ||||| ||| ||||| ||||| | |||| | || |||||||| |||| | Sbjct 51191 TCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTG 51132 Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098 ||||||||| | ||||||||||| | || || | ||||| |||||||| ||||||| Sbjct 51131 GACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCC 51072 Query 63099 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63157 | | || ||| || ||||| | | | | |||||| || || ||||||| | ||| Sbjct 51071 ACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGA 51013 Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217 ||||||||| | | | ||||| ||||| || || | ||| || || | | ||||| Sbjct 51012 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGA 50953 Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277 || ||||| || || ||||| | ||||| || ||||| || |||| | || |||||| Sbjct 50952 CGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGC 50893 Query 63278 ATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA 63337 | ||||||||| || ||| ||||| || || || ||| ||| | || || || | Sbjct 50892 ACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTG 50833 Query 63338 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 63397 || ||||| || || || || | || || || | || ||| || | ||| Sbjct 50832 TGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTA 50773 Query 63398 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63457 |||||||| || || || || || ||| |||| | | || || || ||||| || Sbjct 50772 TCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGA 50713 Query 63458 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAA 63517 || ||||| ||| | || | ||||||||||| || || || | || | || Sbjct 50712 GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGAC 50653 Query 63518 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 63577 | | ||||| ||||| || || || || ||||| ||| || || || || ||| Sbjct 50652 ATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACA 50593 Query 63578 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63637 ||||| | |||||| || || | ||||| | ||| || | | | ||| || Sbjct 50592 CGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAA 50533 Query 63638 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 63695 ||||| || || || |||||||| | ||| ||||| || || ||||| | ||| Sbjct 50532 CGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCG 50475 Query 63696 CCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT----TGAAATA 63751 | || ||||| | ||| | ||| | || |||| | ||| || || || Sbjct 50474 CTGAATTGAGCTCTGCCTCGTGTTTCATGAC-ACAT---TCGTATGTCTGTTGAGAGATC 50419 Query 63752 ATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCA 63811 || || | | || ||||| || || ||||| | | | | ||| || || | Sbjct 50418 ATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC-GGA 50360 Query 63812 CTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 63870 | | ||| | || || || | ||||| ||||| || ||||| || | ||| || ||||| Sbjct 50359 CGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAGAAT 50300 Query 63871 GGCATAATCCGGATG 63885 ||||||||| ||||| Sbjct 50299 GGCATAATCTGGATG 50285 >seq24 Length=853129 Score = 104 bits (114), Expect = 3e-17 Identities = 295/443 (67%), Gaps = 14/443 (3%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || ||||| ||||| || || || || || || || || ||||| | | ||| ||||| Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200 Query 32430 TCCATGAAATCGAATGGATTGG-TAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||||| ||||| || || | | || || || | ||| | | |||| || | Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAG-TATTTCTCGTTACCAAG--AGCCGT 483256 Query 32489 CAA---TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA- 32544 ||| || ||| ||||| || || |||||| ||||| | | | ||||| || | Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316 Query 32545 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 32604 |||| | ||| ||||| | || | |||||||| ||||| | || || || || | Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375 Query 32605 TAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 32662 | ||| || | || | | || || || | | | || || ||| | | || Sbjct 483376 TGATA--TCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCA 483433 Query 32663 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 32722 ||| || ||| || || |||||||| | | || | ||||| ||||| || || || Sbjct 483434 TGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACC 483493 Query 32723 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 32782 | ||| ||||||||||| || |||||||| || | ||||| || ||| |||||||| Sbjct 483494 AGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAAT 483553 Query 32783 TCCTTCTACTGCCGCAAAGGCAA 32805 ||||| || || || || |||| Sbjct 483554 GCCTTCCACGGCAGCGAATGCAA 483576 Score = 86.0 bits (94), Expect = 8e-12 Identities = 195/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || || ||||| || ||||||| || || | || || || ||||| || || Sbjct 483747 TCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATG 483806 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || || || || ||||| || | ||||| | |||||| ||||| || || || || Sbjct 483807 ATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCA 483866 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 | || || || || || || || || ||| || || ||||| | || || | | Sbjct 483867 ACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACA 483926 Query 33102 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCC 33158 || || || || ||||| |||||||| || | || ||| || || | ||| Sbjct 483927 AAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCA 483986 Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | |||||| | ||||| || || ||||||||||| |||||||| | |||||| Sbjct 483987 ATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCAGAT 484039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627564576000