Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq24 96.9 4e-15
>seq24
Length=853129
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/225 (70%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| |||||||||||||| | || ||||| || || || | ||| || || || |
Sbjct 483431 GCATGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAG 483490
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||| | | || || || ||||| |||||||| || | |||||| |||| || ||
Sbjct 483491 ACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAA 483550
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-C 93269
|| ||||||||||| || ||||| || | ||||| ||| || | ||| || || |
Sbjct 483551 AATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAA---GGTGGACTTCTTGTC 483607
Query 93270 T--GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312
| |||||| | | ||||||||||| || ||||| || || ||
Sbjct 483608 TTGAATCCATCTAACTGCCCAATCGGCCTTCTTCTTGATGCAGGG 483652
Score = 96.9 bits (106), Expect = 4e-15
Identities = 180/264 (68%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451
|| || |||| |||||||| || ||||| || |||||||| | || || | |||
Sbjct 483783 TCTGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAACAACGCGCCTCAGGAATC 483842
Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511
|||||||| | || | ||| || | || || ||||| || ||||| || || ||
Sbjct 483843 TGCACTTCACCACTGAAACGCTCAACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCG 483902
Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAA 93568
|| || || | | || | ||| | ||||||||| || || |||| |||
Sbjct 483903 AAGAACGCGAGAACGTGAGACACAAAGTACCGCTCATCATCATTTAGTCTGTTATTCCAG 483962
Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628
||| ||||| || |||||||| | ||||||| | ||||| || || || ||||| ||
Sbjct 483963 TCGTGGAGATCCTTGGAAAGATCAATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTC 484022
Query 93629 TTGTACATATCCCATATGTCTTGA 93652
|| ||||| | ||| || | ||||
Sbjct 484023 TTATACATCTGCCAGATCTGTTGA 484046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556856901974400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |