Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq46 140 3e-28 seq22 116 3e-21 >seq46 Length=1090308 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || || || |||| ||||| || ||| | | Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| ||||| || || ||| Sbjct 104695 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAA 104636 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| ||| || |||| || |||||| Sbjct 104635 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAAC 104576 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||||||||| || Sbjct 104575 ATCCAAAAAGAATCTAC 104559 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || || ||||||| ||||||||| || | Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || |||||||||||||| ||||| || ||| Sbjct 104239 GATACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 104180 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| || || | ||| |||||| Sbjct 104179 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAAC 104120 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || ||| ||| |||| || || Sbjct 104119 ATCCAGAAGGAAAGCACTCTACACTTGGT 104091 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || || || |||| ||| | ||| | | || Sbjct 104959 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTTAAGAGC 104900 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| || || || |||||||| ||||| || || || ||||| Sbjct 104899 AAGATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGCAAG 104840 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||| ||| | ||||| || ||||| || || || || ||| | ||| Sbjct 104839 CAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTTCAT 104780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || ||||| || | || | ||||| || | || Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || |||||||| ||||||||||| ||||| || ||| Sbjct 104467 GACACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAA 104408 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| || || | ||| |||||| Sbjct 104407 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAAC 104348 Query 22399 ATTCAAAAAGA 22409 || ||||| || Sbjct 104347 ATCCAAAAGGA 104337 >seq22 Length=1308897 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || || || ||| Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||| ||| | |||||| || ||| ||||||| |||||| Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCAT 1149369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725135356400