Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq46 140 3e-28
seq22 116 3e-21
>seq46
Length=1090308
Score = 140 bits (154), Expect = 3e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| || ||| | || || || || |||| ||||| || ||| | |
Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || ||||| ||||||||||| ||||| || || |||
Sbjct 104695 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAA 104636
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||| ||||| ||| | |||||| ||| || |||| || ||||||
Sbjct 104635 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAAC 104576
Query 22399 ATTCAAAAAGAATCCAC 22415
|| ||||||||||| ||
Sbjct 104575 ATCCAAAAAGAATCTAC 104559
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || || || || || || ||||||| ||||||||| || |
Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | |||| || || || |||||||||||||| ||||| || |||
Sbjct 104239 GATACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 104180
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || ||||| ||| | |||||| || || | ||| ||||||
Sbjct 104179 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAAC 104120
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || || ||| ||| |||| || ||
Sbjct 104119 ATCCAGAAGGAAAGCACTCTACACTTGGT 104091
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||||||||| || || || |||| ||| | ||| | | ||
Sbjct 104959 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTTAAGAGC 104900
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || |||||||||||||| || || || |||||||| ||||| || || || |||||
Sbjct 104899 AAGATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGCAAG 104840
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| ||| ||| | ||||| || ||||| || || || || ||| | |||
Sbjct 104839 CAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTTCAT 104780
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||| | || ||||| || | || | ||||| || | ||
Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | || || |||||||| ||||||||||| ||||| || |||
Sbjct 104467 GACACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAA 104408
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || ||||| ||| | |||||| || || | ||| ||||||
Sbjct 104407 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAAC 104348
Query 22399 ATTCAAAAAGA 22409
|| ||||| ||
Sbjct 104347 ATCCAAAAGGA 104337
>seq22
Length=1308897
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| ||||| | ||
Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || ||||||||||| || || || || |||
Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||||||||| ||| | |||||| || ||| ||||||| ||||||
Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345
Query 22399 ATTCAAAAAGAATCCACCATACAT 22422
|| || || || |||||| | |||
Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCAT 1149369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419725135356400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |