Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq24 123 6e-23
seq46 122 2e-22
seq39 120 7e-22
>seq24
Length=853129
Score = 123 bits (136), Expect = 6e-23
Identities = 182/257 (71%), Gaps = 2/257 (1%)
Strand=Plus/Minus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
||||| ||| | | || |||| ||| | || ||| |||| ||| | | ||||
Sbjct 483370 GAAGCTGTTGCCATTGAGCAAGAATTCTTAACAGAGGCTCTCCCCTGTGCCTTACTCGGC 483311
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217
||||| ||| ||||||||| ||||||||||| ||||| |||||||| | || |||||
Sbjct 483310 ATGAACTCCGCTCTCATGAAGCAATATATCGAGTTCGTCGCTGATCGACTTTTGACGGCT 483251
Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277
|| ||| | |||||| ||||| || || ||||||| ||| ||||| || ||
Sbjct 483250 CTTGGTAACGAGAAATACTACAAGTCAGCAAACCCCTTCGACTTCATGGAGAATATCTCA 483191
Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTA 269337
|||| || ||||| |||||||| || ||||| || | || || || |||||||
Sbjct 483190 CTCGCTGGTAAGACCAACTTCTTTGAGAAGCGGGTTGGTGATTACCAGAAGGCTGGTGTC 483131
Query 269338 ATGAATCCAGAAGACAA 269354
||||| ||| | ||||
Sbjct 483130 ATGAA--CAGCACACAA 483116
>seq46
Length=1090308
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | |||| || |||||||||||| || ||||| | |
Sbjct 104529 CCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 104588
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || ||||||||||||||||| ||
Sbjct 104589 AGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 104648
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || || ||||| || || | || ||||| || || | || |||||| ||
Sbjct 104649 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACC 104708
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| || || ||||||||||| || || |||||
Sbjct 104709 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | || | ||||| || |||||||| || ||||||
Sbjct 104301 CCACCACGGAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 104360
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| || || | || || || ||||| || ||||||||||| ||||
Sbjct 104361 AAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGG 104420
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| || || || | |||||||| || || | ||| ||| || |||
Sbjct 104421 ATACCCTCCTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACT 104480
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | || || ||||| || || |||||||||||||| || |||||
Sbjct 104481 TCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
Score = 113 bits (124), Expect = 1e-19
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || || | || || | || | |||||||| || ||||| || ||||||
Sbjct 104070 TGGCCACCACGAAGACGGAGGACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCG 104129
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || || || || | || || || ||||| || ||||||||||| |
Sbjct 104130 CTCAAAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGT 104189
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || |||||||| || | || ||||| || || | ||| |||||
Sbjct 104190 GGGATACCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCAATGGTATCCGAGGATTCC 104249
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || ||||| ||||| || |||| ||||| ||||| ||||||||
Sbjct 104250 ACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 104299
Score = 91.5 bits (100), Expect = 3e-13
Identities = 135/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| || ||||||| || || || ||||| |||||||||| || || || |||||
Sbjct 104772 AGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGTTCGGCCGTCC 104831
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381
|| | || || || |||||||| |||||||||||| ||||| || || || ||
Sbjct 104832 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCT 104891
Query 288382 TGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440
||||| || ||| || ||||| || || | ||| || || || || || ||||| ||
Sbjct 104892 TGGATCTT-GCTCTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGT 104950
Query 288441 CTTCCCGGT 288449
||| |||||
Sbjct 104951 CTTGCCGGT 104959
>seq39
Length=1363582
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| |||||||| ||||| | || || || || || || | ||| ||||| |||||||||
Sbjct 689496 TTCTGGATATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATC 689555
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
| |||||||| || |||||||| ||||||||||| |||| || || || ||
Sbjct 689556 AATCGCTGTTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCG 689615
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | |||| ||| || || || || ||||| |||||||| || || |||||||||||
Sbjct 689616 ATGGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAA 689674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179645935979680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |