Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq46 105 7e-18
seq22 89.7 5e-13
>seq46
Length=1090308
Score = 105 bits (116), Expect = 7e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || ||||||||||| |||||||| || | || || || | || |||||||||
Sbjct 104553 TGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCAAGCTGC 104612
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
||||| ||| | || || ||||| ||||| ||||||||||| || || || || || ||
Sbjct 104613 TTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTTG 104672
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| || || | || || | || || || | || | ||||||||| ||
Sbjct 104673 GACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTGCCAGTG 104732
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| ||| || || |||||||||||
Sbjct 104733 AGAGTCTTGACAAAAATTTGCAT 104755
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311
||| || || |||||||| || | || || | || || ||||||||||| || |
Sbjct 104108 TTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGCTGCTTGCCAGCGAA 104167
Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371
|||||| ||||| ||||| || || || || || || || || || || ||| ||
Sbjct 104168 AATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGACTTGACGTT 104227
Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431
|| | ||||| || |||||||| | ||| | ||||| || ||||| || || ||
Sbjct 104228 GTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCAC 104287
Query 64432 GAAAATTTGCAT 64443
|||||| |||||
Sbjct 104288 GAAAATCTGCAT 104299
>seq22
Length=1308897
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || || || || || |||||||| || | || ||| || | ||
Sbjct 1149377 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCC 1149318
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|||||||||||||||||| | || | ||||| ||||| ||||| ||||| || || ||
Sbjct 1149317 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCC 1149258
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || || | ||||| || | || | |||
Sbjct 1149257 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 1149198
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | || || ||||| || |||||
Sbjct 1149197 TTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 1149166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499641302486400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |