Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq46 114 1e-20
seq22 104 2e-17
>seq46
Length=1090308
Score = 114 bits (126), Expect = 1e-20
Identities = 144/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
||||||||| |||||||||||||||| ||| || |||||||| || || || | |
Sbjct 104336 CTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAA 104395
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
|| ||||||||||||||||| || ||||| || || || ||| | || | || | |
Sbjct 104396 AATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATC-TTGAATCTTGGACTTCACGT 104454
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | |||||||| |||||| || || | || | || |||||||| ||||| ||
Sbjct 104455 TG-TCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTG 104513
Query 138601 ACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 104514 ACGAAGATTTGCAT 104527
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483
||||| || |||||||||||||||| |||||| |||||||| || || || | |
Sbjct 104109 TCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAA 104168
Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543
|| ||||||||||||||||| || ||||| || ||||| ||| || || | |
Sbjct 104169 ATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGACTTGACGTTG 104228
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | ||| || | || ||||| || | || | || || ||||||| || || ||
Sbjct 104229 TCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCACG 104288
Query 138604 AAAATCTGCAT 138614
|||||||||||
Sbjct 104289 AAAATCTGCAT 104299
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || ||||| ||||||||||| | ||| || ||||| || || || || | |
Sbjct 104562 GATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCA 104621
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| |||||||||||||||||||| || || || ||||| ||| | || | || |
Sbjct 104622 AAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGAC 104680
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||| | ||| || ||||| | || | || || ||||| ||||| |
Sbjct 104681 GTTG-TCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCT 104739
Query 138599 TTACAAAAATCTGCAT 138614
| |||||||| |||||
Sbjct 104740 TGACAAAAATTTGCAT 104755
>seq22
Length=1308897
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||||| ||||| || || || |||| |
Sbjct 1149359 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCCTCAAGCTGCTTGCCGGCA 1149300
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| | ||||||||||||||||| || || || ||||| ||| || || | |
Sbjct 1149299 AAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 1149240
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
|||| | | |||||||| ||||||||||| | || | || || || || || || ||
Sbjct 1149239 TTGT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTT 1149181
Query 138600 TACAAAAATCTGCATGGCT 138618
|| || ||||||||| ||
Sbjct 1149180 CACGAAGATCTGCATGACT 1149162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258926163200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |