Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq46 114 1e-20 seq22 104 2e-17 >seq46 Length=1090308 Score = 114 bits (126), Expect = 1e-20 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||||||| |||||||||||||||| ||| || |||||||| || || || | | Sbjct 104336 CTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAA 104395 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 || ||||||||||||||||| || ||||| || || || ||| | || | || | | Sbjct 104396 AATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATC-TTGAATCTTGGACTTCACGT 104454 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||||| |||||| || || | || | || |||||||| ||||| || Sbjct 104455 TG-TCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTG 104513 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 104514 ACGAAGATTTGCAT 104527 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || |||||||||||||||| |||||| |||||||| || || || | | Sbjct 104109 TCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAA 104168 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || ||||||||||||||||| || ||||| || ||||| ||| || || | | Sbjct 104169 ATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGACTTGACGTTG 104228 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||| || | || ||||| || | || | || || ||||||| || || || Sbjct 104229 TCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCACG 104288 Query 138604 AAAATCTGCAT 138614 ||||||||||| Sbjct 104289 AAAATCTGCAT 104299 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| ||||||||||| | ||| || ||||| || || || || | | Sbjct 104562 GATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCA 104621 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||||||||||||||| || || || ||||| ||| | || | || | Sbjct 104622 AAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGAC 104680 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||| || ||||| | || | || || ||||| ||||| | Sbjct 104681 GTTG-TCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCT 104739 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 104740 TGACAAAAATTTGCAT 104755 >seq22 Length=1308897 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||||| ||||| || || || |||| | Sbjct 1149359 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCCTCAAGCTGCTTGCCGGCA 1149300 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | ||||||||||||||||| || || || ||||| ||| || || | | Sbjct 1149299 AAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 1149240 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| ||||||||||| | || | || || || || || || || Sbjct 1149239 TTGT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTT 1149181 Query 138600 TACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 1149180 CACGAAGATCTGCATGACT 1149162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258926163200