Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq73 159 4e-34 seq24 120 4e-22 >seq73 Length=484926 Score = 159 bits (176), Expect = 4e-34 Identities = 1103/1754 (63%), Gaps = 43/1754 (2%) Strand=Plus/Minus Query 115548 GGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATG 115607 |||| ||| ||||| || ||||| || ||||| | || |||||||| || | ||| Sbjct 52306 GGCCATTGTGCGGAGATAATACATGCCGGTCTTCAAGCCAAGCTTCCAGCCAGTGAAATG 52247 Query 115608 CATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 115667 ||| | | |||| | || || | |||| | |||||| ||||| || Sbjct 52246 CATGCTTGTGATCTTGCCCATGGTGGGGTCCTTCATGTGAATGTTCATTGACTGGGACTG 52187 Query 115668 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTC 115724 ||| ||||| || || || || ||||| | |||| || || || || Sbjct 52186 ATCAATGAAAGCACCACGGTCAGCAGCCATCTG---CACAATGTTACGCTGAGAAATCTC 52130 Query 115725 CCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGA 115784 ||| || || ||||||| ||||||||| |||||| | ||||| ||||| || Sbjct 52129 CCAGACGGTCTTGTAGAGAGCCTTAATATCTGATGGGATGTTGGGAATATTCTGGATGGA 52070 Query 115785 GCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAG 115844 ||||| | || ||| | | |||||| | | |||||||| || || | || Sbjct 52069 ACCACCATCAGCGATAATGCGGTTCTTCATGTTGTCAGACCAGAGTCCCATATCGACAAG 52010 Query 115845 ATCCTCCACGAGGTGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAG 115901 ||||| ||| || | || || || ||||| || || || || | Sbjct 52009 ATCCTT---GAGAAGCCAAGGGTTCACCACCTGGAACTCTCCTGCAAGCACACGGCGGGA 51953 Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 || ||||||| |||||||||||||||||||| ||| ||| | ||| ||| ||| Sbjct 51952 GTAAATGTTGGAGGTGTATGGCTCAAAGCACTCGTTGAAACCAAGGATCTGGCTAGTGCT 51893 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021 ||| || ||||| || || | ||||| |||||||||| || | | || | | Sbjct 51892 GGCAGTTGGCATAGGAGCAACCAGAAGACTGTTGCGGATGCCATGTTGCTTGATCTGCTG 51833 Query 116022 CTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGG 116079 ||| | | ||||| || || || || | | | | | ||||||||||| | || Sbjct 51832 CTTCAAGCTATCCCAATCCCAGA-GATCTGTAGGAGTGACTC-CCCACATATCATATTGA 51775 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 116139 || |||| ||||| || ||||| ||| |||||||||| ||||| | || || || Sbjct 51774 AGCTCTCCTTTCGACGCAGGGGATCCTTCATATGTCTCATACGGGCCATTAATCTTGGCA 51715 Query 116140 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199 | || | || || || |||| || || ||||| || || || ||| | Sbjct 51714 AGCTCTACGGAAGCAGTAAGAGCACCGTGGTAGATAGTCTCGAAGATTTGAATATTGAGA 51655 Query 116200 GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA--AATAAATACATCCGCGAGAC 116257 ||| ||||| || ||||| | | ||| || | || ||| ||||||| | | Sbjct 51654 TGCTTTGCCTCAGGTGAGTCAAAAGGAACACG-CAGAGCCAAGAAAG-CATCCGCCAATC 51597 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACG 116316 | || ||||| | |||| || ||||| | | || ||| | || ||| ||| Sbjct 51596 CCTGTACACCAACTGCAATGGGACGATGACGGAAGTTGCTCTTCCTTGCC-TCTGGGACG 51538 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || | || |||||| | | | || | || ||||| ||||| | || ||| Sbjct 51537 GGGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGTAACAACTTGGACGACTTCG 51478 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 |||||||| | | | ||| || | | | | | || ||| | | ||||| || || Sbjct 51477 TGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCATATCCACAAAGGTGGGAAGTGCAATA 51418 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || |||| || || |||| ||||||| | | ||| || | ||| || || ||| Sbjct 51417 GAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCTGTGCAC 51358 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 || || || || || || |||| |||||| || || ||| ||| ||||||||| Sbjct 51357 AAGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCACGCATCC 51298 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-C 116615 ||||||||||| |||| | || ||||| ||||| | | || || | | ||| | | Sbjct 51297 TTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACCAGAGC 51238 Query 116616 ATCGGCGGCTGGCACAGTGGCGTT-GGCTC-GCCCCTCCTCCTCGTACTTTGTGTAGAGG 116673 | | | || || || | || ||| | ||||| ||| ||||| ||| | Sbjct 51237 TTTTGAGCCT-TTACGGT--CTTTCGGCCCTTGCCCTCGCGCTCATACTTCTCGTACAAA 51181 Query 116674 GCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 || |||||||| || || | |||| || || || || || |||||| | || Sbjct 51180 GCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGGACACATCAGG 51121 Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 | ||| | || | |||||||| |||||||||||| || || ||||| | || || Sbjct 51120 GTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCATAG 51061 Query 116794 AAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 |||||||| || ||| |||| || | || ||||| | | || | || || Sbjct 51060 AAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGGAACTCG 51001 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGA 116907 | || ||| |||||||| || || ||||| | || | | || | |||| | Sbjct 51000 AAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGACGCTTG---TTA 50944 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 ||| | || | ||||| || || || ||| || || || |||||||| | |||||| Sbjct 50943 CCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACAATACCA 50884 Query 116968 TCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGT 117025 | || || || || || || || ||| | | |||| || |||||| | Sbjct 50883 TTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCC--AGTAGCTCGGATTCTGTGGATAT 50826 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 | |||||| || || || ||| || || || || | | || | | |||| Sbjct 50825 TGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCATAGA 50766 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | ||||| || ||| |||| | | | ||||||||| ||||| || | | | Sbjct 50765 TACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAGCCTGAG 50706 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 117204 | || ||||| ||||||| || || | || || |||| ||| | | |||||| Sbjct 50705 GGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAA-GTACTTGTTCGACATCAAG 50647 Query 117205 TCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATA 117264 | ||| ||||| | | || ||| ||||| || || ||||| | | || ||||| Sbjct 50646 TTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACACGCATG 50587 Query 117265 AACATGTATTGGGG 117278 | ||||| ||| || Sbjct 50586 ATCATGTGTTGTGG 50573 >seq24 Length=853129 Score = 120 bits (132), Expect = 4e-22 Identities = 344/518 (66%), Gaps = 16/518 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||||||||||| |||||||| ||||| ||| |||| |||||||||||| Sbjct 483146 GTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTCTCCAT 483205 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| ||| || | | || | | ||| | | || | || Sbjct 483206 GAAGTCGAAGGGGTTTGCTGACTTGTAGTATTTCTCGTTACCAAGAGCCGTCAAA--AGT 483263 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | |||| |||| || || | ||| | |||||||| |||| | | | Sbjct 483264 CGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAGTAAGGCA 483323 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||| || || | ||| | | ||||||| | |||||||| | ||| | Sbjct 483324 CAGGGGAGAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGATGATATCC 483383 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA--CA-GCAAAC 127525 || | || | | || | | || | |||| ||| | | | || ||||| Sbjct 483384 TGGACAGCCTGTTTGCTTGGGCGGT-GCTTCAAGTGA-GAAAA-TAGAAGGCATGCAAAG 483440 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || || || ||||||||||| |||||||| || ||||| ||| |||||| | |||| Sbjct 483441 TCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACCAGCCATG 483500 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||||| ||| || || || ||| || ||| |||||| || || ||| Sbjct 483501 AGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAATGCCTTCC 483560 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT-ATCAAACCAC 127702 || ||||| |||| | ||| | ||| |||| ||||| |||| | || ||| Sbjct 483561 ACGGCAGCGAATGCAACCAAACGTTGGGCGAAGG---TGGACTTCTTGTCTTGAATCCAT 483617 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | | ||||| | ||||| |||| ||| || ||||| Sbjct 483618 CTAACTGCCCAATCGGCCTTCTTCTTGATGCAGGGGAC 483655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502905449600