Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq22 122 1e-22 seq46 114 1e-20 seq39 95.1 1e-14 >seq22 Length=1308897 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || | || || |||||||||||||| || Sbjct 1149357 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAA 1149298 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||| ||||| | || | | |||||||||| |||||| ||||| | Sbjct 1149297 GATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1149238 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | ||||| || || ||||| || || || || Sbjct 1149237 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTCAC 1149178 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 1149177 GAAGATCTGCAT 1149166 >seq46 Length=1090308 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||| || ||||| || | || || ||||||||||| || || Sbjct 104565 TCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 104624 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||| ||||| | || | | |||||||||| ||||| ||||| ||| Sbjct 104625 ATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTT 104683 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| |||||| || || | |||||||| ||||| || || || || || Sbjct 104684 GTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGAC 104743 Query 46582 AAAGATTTGCAT 46593 ||| |||||||| Sbjct 104744 AAAAATTTGCAT 104755 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||||||||| ||||||||| | ||| || | || |||||||||||||| Sbjct 104331 GTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCGTCCATCCTCGAGCTGCTTGCCA 104390 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | ||||| ||||| | || | | |||||| || ||||| ||| Sbjct 104391 GCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATCTTGAATCTTGGACTTC 104450 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | |||||| ||| || || |||| || ||||| || || || || || Sbjct 104451 A-CGTTGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCTTACCAGTGAGAGT 104509 Query 46576 TTTAACAAAGATTTGCAT 46593 || || ||||||||||| Sbjct 104510 CTTGACGAAGATTTGCAT 104527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || || ||||| ||||| ||||||||| | ||| || | || |||||||||||||| Sbjct 104103 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGCTGCTTGCCA 104162 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | ||||| ||||| | || | | |||||||||| |||||| |||| Sbjct 104163 GCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGACTTG 104222 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | || || |||||||| |||| ||||| || || || |||| || Sbjct 104223 A-CGTTGTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGTCAATGT 104281 Query 46576 TTTAACAAAGATTTGCAT 46593 || || || || ||||| Sbjct 104282 CTTCACGAAAATCTGCAT 104299 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| || |||||||| || || || |||| ||| Sbjct 104775 ACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGTTCGGCCGTCCTCG 104834 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| || | ||||| || || | || | || ||||||||| | Sbjct 104835 AGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCTTGG 104894 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | ||| | | | |||||| || || || || | |||||||| || Sbjct 104895 ATCTTGCTCTT-AACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTT 104953 Query 46564 GCCCGT 46569 ||| || Sbjct 104954 GCCGGT 104959 >seq39 Length=1363582 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| |||||||||||||| || || || || | || ||||| ||||| || ||||| | Sbjct 689494 CCTTCTGGATATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGA 689553 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||| ||||| | || | | ||||| ||| ||||||| ||||| | Sbjct 689554 TCAATCGCTGTTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGT 689613 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || ||| ||| ||||| || | ||||| || || ||||| || || || || | Sbjct 689614 CGATGGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGA 689673 Query 46584 AG 46585 || Sbjct 689674 AG 689675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234443331200