Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq24 127 2e-24 seq46 118 1e-21 seq22 109 5e-19 >seq24 Length=853129 Score = 127 bits (140), Expect = 2e-24 Identities = 351/529 (66%), Gaps = 8/529 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || || || ||| |||||||| || || || || || | Sbjct 483128 CATGACACCAGCCTTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGC 483187 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 | || || | ||| || || |||||||| |||| ||||||| || || | Sbjct 483188 GAGTGAGATATTCTCCATGAAGTCGAAGGGGTTTGCTGACTTGTAGTATTTCTCGTTACC 483247 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAA 132768 | || || | | || | || || ||||||||||| |||||| |||| || | Sbjct 483248 AAGAGC-CGTCAAA-AGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAG 483305 Query 132769 TTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 || | || || | | |||| || || || || || | || |||||| ||||| || Sbjct 483306 TTCATGCCGAGTA-AGGCACAGGGGAGAGCCTCTGTTAAGAATTCTTGCTCAATGGCAAC 483364 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAA 132887 || ||||||| ||| ||| || | ||| || || ||| ||| || || Sbjct 483365 AGCTTCGGTGATGATATCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAA 483424 Query 132888 CATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAA 132947 | | ||| ||||||||| ||||| ||||||||| | || ||||| ||||| || Sbjct 483425 TAGAAGGCATGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAA 483484 Query 132948 AGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGA 133007 |||| || | ||||||||| || || || |||||||| || || || ||| || Sbjct 483485 GGTCAGACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACT 483544 Query 133008 AAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCTT 133066 ||||| | ||| || ||||| ||||| || |||| || | | |||| |||| |||||| Sbjct 483545 GAAGAAAATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAAGGTGGACTTCTT 483604 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 || | ||||| | | ||||| |||||||| | |||| ||| || Sbjct 483605 GTCTTG-AATCCATCTAACTGCCCAATCGGCCTTCTTCTTGATGCAGGG 483652 Score = 107 bits (118), Expect = 2e-18 Identities = 191/278 (69%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 133165 ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 || || ||||| || ||| || || | || ||||| | ||||||||| ||| || Sbjct 483753 ACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATGATCTGG 483812 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGA 133284 || || || || || |||||||| | ||||||||| | ||||||||| |||| Sbjct 483813 AAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCAACCAAG 483872 Query 133285 TTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGG 133344 || |||||||||||||| || ||||||||| || || || ||||| | || | Sbjct 483873 TTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACAAAGTAC 483932 Query 133345 CGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCC 133401 ||||| | || || | | | ||||||| | |||||||| || || | || Sbjct 483933 CGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCAATTTCT 483992 Query 133402 TCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||| ||||||| || || ||||| || || || ||||| Sbjct 483993 TCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACAT 484030 >seq46 Length=1090308 Score = 118 bits (130), Expect = 1e-21 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| ||| | || || ||| | || Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | || || ||||| || || | ||||| Sbjct 104467 GACACCATCGACAACG-TGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCA 104409 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||||| ||| ||||| ||||| || || | || || | | ||||||||| Sbjct 104408 ACAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAA 104349 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| ||| || || || ||||| || ||| Sbjct 104348 CATCCAAAAGGAGAGC-ACTCTCCACTTGGTTCTCCGT 104312 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| ||||||||| | || ||||| | | Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||||||||| | ||||| Sbjct 104695 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCA 104637 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || ||||| ||||| || || | || || ||| |||||||| Sbjct 104636 ACAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAA 104577 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| | || || || ||||| || ||| Sbjct 104576 CATCCAAAAAGAATCTACTCTTCACTTGGTCCTTCGT 104540 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || ||||| | || || || || | Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||| ||||| || || | ||||| Sbjct 104239 GATACCATTGACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 104181 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||||| ||| ||||| ||||| || || | || || | | ||||||||| Sbjct 104180 ACAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAA 104121 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| |||||| || || || ||||| || ||| | | || |||| Sbjct 104120 CATCCAGAAGGAAAGCACTCTACACTTGGTCCTCCGTCTTCGTGGTGGCC 104071 >seq22 Length=1308897 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| |||||||| || | |||||| Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || ||||| ||||| || || | || |||||| |||||||||| Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| | || || || Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCG 1149380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169298790400