Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq24 127 2e-24
seq46 118 1e-21
seq22 109 5e-19
>seq24
Length=853129
Score = 127 bits (140), Expect = 2e-24
Identities = 351/529 (66%), Gaps = 8/529 (2%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || || || ||| |||||||| || || || || || |
Sbjct 483128 CATGACACCAGCCTTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGC 483187
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708
| || || | ||| || || |||||||| |||| ||||||| || || |
Sbjct 483188 GAGTGAGATATTCTCCATGAAGTCGAAGGGGTTTGCTGACTTGTAGTATTTCTCGTTACC 483247
Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAA 132768
| || || | | || | || || ||||||||||| |||||| |||| || |
Sbjct 483248 AAGAGC-CGTCAAA-AGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAG 483305
Query 132769 TTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827
|| | || || | | |||| || || || || || | || |||||| ||||| ||
Sbjct 483306 TTCATGCCGAGTA-AGGCACAGGGGAGAGCCTCTGTTAAGAATTCTTGCTCAATGGCAAC 483364
Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAA 132887
|| ||||||| ||| ||| || | ||| || || ||| ||| || ||
Sbjct 483365 AGCTTCGGTGATGATATCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAA 483424
Query 132888 CATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAA 132947
| | ||| ||||||||| ||||| ||||||||| | || ||||| ||||| ||
Sbjct 483425 TAGAAGGCATGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAA 483484
Query 132948 AGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGA 133007
|||| || | ||||||||| || || || |||||||| || || || ||| ||
Sbjct 483485 GGTCAGACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACT 483544
Query 133008 AAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCTT 133066
||||| | ||| || ||||| ||||| || |||| || | | |||| |||| ||||||
Sbjct 483545 GAAGAAAATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAAGGTGGACTTCTT 483604
Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115
|| | ||||| | | ||||| |||||||| | |||| ||| ||
Sbjct 483605 GTCTTG-AATCCATCTAACTGCCCAATCGGCCTTCTTCTTGATGCAGGG 483652
Score = 107 bits (118), Expect = 2e-18
Identities = 191/278 (69%), Gaps = 3/278 (1%)
Strand=Plus/Plus
Query 133165 ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224
|| || ||||| || ||| || || | || ||||| | ||||||||| ||| ||
Sbjct 483753 ACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATGATCTGG 483812
Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGA 133284
|| || || || || |||||||| | ||||||||| | ||||||||| ||||
Sbjct 483813 AAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCAACCAAG 483872
Query 133285 TTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGG 133344
|| |||||||||||||| || ||||||||| || || || ||||| | || |
Sbjct 483873 TTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACAAAGTAC 483932
Query 133345 CGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCC 133401
||||| | || || | | | ||||||| | |||||||| || || | ||
Sbjct 483933 CGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCAATTTCT 483992
Query 133402 TCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||| ||||||| || || ||||| || || || |||||
Sbjct 483993 TCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACAT 484030
>seq46
Length=1090308
Score = 118 bits (130), Expect = 1e-21
Identities = 160/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || ||||| ||| | || || ||| | ||
Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | || || ||||| || || | |||||
Sbjct 104467 GACACCATCGACAACG-TGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCA 104409
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||||| ||| ||||| ||||| || || | || || | | |||||||||
Sbjct 104408 ACAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAA 104349
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| ||| || || || ||||| || |||
Sbjct 104348 CATCCAAAAGGAGAGC-ACTCTCCACTTGGTTCTCCGT 104312
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || ||||| ||||| ||||||||| | || ||||| | |
Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||| ||||||||||| | |||||
Sbjct 104695 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCA 104637
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| || || | || ||||| ||||| || || | || || ||| ||||||||
Sbjct 104636 ACAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAA 104577
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||| ||| | || || || ||||| || |||
Sbjct 104576 CATCCAAAAAGAATCTACTCTTCACTTGGTCCTTCGT 104540
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || || || ||||| | || || || || |
Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || |||| ||||| ||||| || || | |||||
Sbjct 104239 GATACCATTGACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 104181
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||||| ||| ||||| ||||| || || | || || | | |||||||||
Sbjct 104180 ACAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAA 104121
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| |||||| || || || ||||| || ||| | | || ||||
Sbjct 104120 CATCCAGAAGGAAAGCACTCTACACTTGGTCCTCCGTCTTCGTGGTGGCC 104071
>seq22
Length=1308897
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || |||||| | || || ||| | ||
Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| |||||||| || | ||||||
Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | || ||||| ||||| || || | || |||||| ||||||||||
Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || ||| | || || ||
Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCG 1149380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169298790400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |