Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq39 122 3e-22
seq46 93.3 2e-13
>seq39
Length=1363582
Score = 122 bits (134), Expect = 3e-22
Identities = 197/283 (70%), Gaps = 9/283 (3%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
||||| | ||||| || || || |||||||| |||||| || ||||| || |||||
Sbjct 613721 GCAGTTGTCACTGTCCCAGCCTACTTCAATGACCAACAACGTCAGGCAACCAAGGATGCT 613662
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| || |||||||| | || ||||| || || | || || || || || || |||||
Sbjct 613661 GGCCAAATTGCTGGCCTGAACGTTCTGCGTGTTGTCAACGAGCCAACTGCCGCCGCTCTT 613602
Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501
|| || || || | ||||| | || || || | ||| || | |||| ||
Sbjct 613601 GCTTACGGTCTTG-------AAAAGGATGAG--GATAAGATCATTGCCGTCTATGATCTT 613551
Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561
|||||||||||| |||| ||||| ||| ||| | | || || || || || |||
Sbjct 613550 GGTGGAGGAACTTTCGATATCTCTGTCCTTGAAATCCAGAAGGGAGTGTTCGAGGTCAAG 613491
Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
| ||||||||||||||||| | || ||||| ||| | ||||
Sbjct 613490 TCTACCAATGGTGATACTCACTTGGGTGGTGAGGATTTCGATA 613448
Score = 96.9 bits (106), Expect = 1e-14
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 391059 TTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATT 391118
||||| || || || || || || ||||| || ||||| || || || || |||| |||
Sbjct 689674 TTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCGTCCGATACCATC 689615
Query 391119 GAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTA 391178
|| | | || || || || |||||||||||||||||||| || ||||| || ||
Sbjct 689614 GACAATGTCAAGTCGAAGATCCAGGATAAGGAAGGAATTCCTCCGGACCAACAGCGATTG 689555
Query 391179 ATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAG 391238
|| ||| | || || ||||| || ||||| |||| || | || || ||||| | |||
Sbjct 689554 ATCTTCGCTGGAAAGCAACTCGAGGATGGCCGAACCCTGTCAGACTACAATATCCAGAAG 689495
Query 391239 G 391239
|
Sbjct 689494 G 689494
>seq46
Length=1090308
Score = 93.3 bits (102), Expect = 2e-13
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || |||||||| || ||||| | || ||||| || ||
Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | || || |||||||||||||| || || || || || |||
Sbjct 104467 GACACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAA 104408
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | |||||| | || || || || || |||||| |||||||| || || ||
Sbjct 104407 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAAC 104348
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| || || ||||| ||
Sbjct 104347 ATCCAAAAGGAGAGCACTCTCCACTTGGT 104319
Score = 93.3 bits (102), Expect = 2e-13
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || || || || ||||| || || || || ||||| || ||||| ||
Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | || || ||||| || ||||| ||||||||||| || |||
Sbjct 104695 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAA 104636
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | || || | || || || ||||| ||||| ||||| | | || || ||
Sbjct 104635 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAAC 104576
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | || || | || |||||||| ||
Sbjct 104575 ATCCAAAAAGAATCTACTCTTCACTTGGT 104547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975704224220480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |