Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq46 152 4e-31
seq59 91.5 1e-12
seq102 87.8 1e-11
>seq46
Length=1090308
Score = 152 bits (168), Expect = 4e-31
Identities = 919/1456 (63%), Gaps = 17/1456 (1%)
Strand=Plus/Minus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
|| ||||||||||| | ||| || || || ||||| || || || || | |||| |||
Sbjct 2842 ATTCCATTGGCATCAAGATCGAAGGTAACCTCAATCTGTGGAACACCACGTGGAGCGGGT 2783
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | || | || || || || || || ||| ||||||
Sbjct 2782 GGGATACCGGTAAGCTCGAACTTGCCGAGCAAGTTGTTGTCCTTGGTGCGAGCACGTTCA 2723
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453
|||||||| | |||||| || ||| || || || || | || | || ||| |
Sbjct 2722 CCCTCGAAGACTTGGATGAGCACACCAGGCTGGTTGTCGGAGAAGGTGGAGAAGACTTCG 2663
Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
|| || || || || || ||||||| ||| | |||||||| ||||| ||
Sbjct 2662 GACTTCTTGGTTGGGATAGTAGTGTTTCGGGGAATGAGCTTGGTCATCTGGCCACCAGCA 2603
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571
|| || | ||| ||||| | || | ||||| | || | || | || | | ||
Sbjct 2602 GTCTCGATACCGAGAGACAATGGGGCAACATCGAGGAGCAAGATCTCGTTGGTGGACTTG 2543
Query 517572 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630
| | | | | |||| || ||||| || || | ||||||||| || |||||||| ||
Sbjct 2542 GAGCTGGTATCACCAGAGAGGATAGCAGCCTGGACAGCAGCACCGTAGGCAACAGCCTCG 2483
Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 517690
|| || || | || | || | | || || ||||| |||| | | || | |||
Sbjct 2482 TCGGGGTTGATAGACTTGTTGGGCTCCTTGCCGTTGAAGAAATCGGTGATGAGCT-TCTG 2424
Query 517691 ACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC-CTGTGATTTAT 517748
| | || ||||| | || || || || | ||||| || || || ||| || || |
Sbjct 2423 GATTCTTGGGATACGGGTAGAGCCACCGACGAGGACAATCTCGTGGACGCTG-GACTTGT 2365
Query 517749 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTG 517808
| | || | ||| || || || || || || ||| | ||| || | |||
Sbjct 2364 CGATCTTAGCATCTTGCAAGACACGCTCGACTGGCTCGAGAGTGGATCTGAAGAGGTCCT 2305
Query 517809 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAA 517866
|||||||| |||||| | || | || || || | || || |||| || || |
Sbjct 2304 GGCAAAGTTCCTCGAATCTGGCACGGGT--GATGGAAGTGTAGAAGTCAACACCCTCATA 2247
Query 517867 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 517926
| || || | || || | || |||| | |||||| || | ||| || ||||| ||
Sbjct 2246 GAGGGAGTCGATCTCGATGGAGGTCTGAGCAGCAGAAGAGAGAGTACGCTTGGCACGCTC 2187
Query 517927 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA-ATCTGTTTTATATT 517985
|| || || | || | || | || ||| | | || | ||| | || || |
Sbjct 2186 GCAAGCAGTTCGGAGACGACGGAGAGCACGTGC-GCTAGAGGAGATATCCTTCTTGTACT 2128
Query 517986 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 518045
| | |||||| || | || | | || ||||| || || || || ||||||||||
Sbjct 2127 TGCGCTTGAACTCGTTGACGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCTCCCA 2068
Query 518046 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 518105
| | |||| || | || | | |||| ||| | || ||||| | | | || |
Sbjct 2067 AGTGGGTATCACCAGCAGTGGACTTGACTTCGAAGATACCTTCTTCGATGGTAAGGAGGG 2008
Query 518106 TTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 518165
||||| ||||||||||| | ||| || || || || || || || |
Sbjct 2007 AAACATCGAAAGTTCCACCACCAAGATCGAAGATGAGGACGTTTCGCTCACCCTCAACCT 1948
Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225
| || || ||||| || |||| |||||| || || || || || || ||||| | ||| |
Sbjct 1947 TCTTGTCGAGACCGTAAGCAATAGCAGCCGCGGTGGGCTCGTTGATGATTCTGAGAACGT 1888
Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285
| | |||||| || || ||||| || ||||| ||||| || || ||||| || || |
Sbjct 1887 TCAAACCAGCGATCAAGCCAGCATCCTTGGTGGCCTGTCTCTGGGAGTCGTTGAAGTAGG 1828
Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345
| || || || | ||||| | | || ||||| || || || || |
Sbjct 1827 CTGGGACGGTGACGACGGCGTTGTTAACGGTACCACCAAGGTAGGCCTCAGCAGTCTCAC 1768
Query 518346 TCAT-TTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATT- 518403
||| ||||| || | ||| || || || | |||||| | | ||||||| |||
Sbjct 1767 GCATCTTTACC-AAGACCATGGAAGAGATCTCTTCTGGAGTGAACTGCTTGGTCTCACCC 1709
Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463
|||| || || |||| || || || | || ||| || ||||| |||
Sbjct 1708 TTGAATTGG-ACCTCAATGAGGGGCTTTCCTCCCTTGTCAACAACCTTGAATGGGAAGTG 1650
Query 518464 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523
|||||||| | || || |||| || || | | ||||| ||||| || |||||
Sbjct 1649 CTTCATATCGGCCTGGACTTCAGGGTCGTTGAACTTGCGGCCAATCAATCGCTTGGCATC 1590
Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583
|| | ||| || | || || || || |||||| || || ||||| || |||||| |
Sbjct 1589 GAAGACAGTGTTTGCTGCGTTCATGGCGACTTGATTCTTAGCAGCATCACCGATCAGACG 1530
Query 518584 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643
|| || || || || | ||| | || || || || || ||||| || || || || ||
Sbjct 1529 CTCCGTATCGGTGAAGGCAACGAACGAGGGCGTCGTTCGGTTACCCTGGTCGTTGGCGAT 1470
Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 518703
|||||| | | | ||| | | | ||||||||||| | || ||||| | ||||||
Sbjct 1469 AATTTCGATTCTGTCATCTCGAAAGACACCTACACAGGAGTAGGTCGTTCCAAGATCAAT 1410
Query 518704 ACCAATAGCAATTTTA 518719
||| |||| || |||
Sbjct 1409 ACCTATAGAGATGTTA 1394
>seq59
Length=381799
Score = 91.5 bits (100), Expect = 1e-12
Identities = 205/305 (67%), Gaps = 6/305 (2%)
Strand=Plus/Minus
Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084
|||| ||||| | ||||||||| | || | || | ||||| | || ||| | |
Sbjct 336113 TATCGAAATCCTGACCTCCCAAGTGGGTGTCACCGGCGGTAGCCTTAACAGTGAAGACGC 336054
Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144
|| | | | ||| |||| ||||| |||||||| || | ||| | || || |
Sbjct 336053 CACCCTGGATGTTCAAGAGAGAAACATCGAAAGTTCCACCGCCGAGATCGTAGATGAGAA 335994
Query 518145 CATTCATTTCTTTGTCTTGGTTTTT----ATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200
|||| || ||| || | |||| | |||||||||| |||| ||| |||||||||
Sbjct 335993 CATTTCGCTCCTTG-CTGGATTTTCCGGCACCAAGACCATAAGCAATAGCGGCAGCAGTT 335935
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
|| || || || || | | ||| || |||||||| || || |||||||| || |||
Sbjct 335934 GGCTCGTTGATGATACGGAGAACGTTGAGACCAGCGATGGCACCAGCATCTTTGGTAGCT 335875
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTT 518319
|| | || ||||| || || ||||| ||||| || || || | || | ||||||
Sbjct 335874 TGACGCTGGTTGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCCTTGGTGACCTTCTTG 335815
Query 518320 ACCAA 518324
||||
Sbjct 335814 CCCAA 335810
>seq102
Length=335414
Score = 87.8 bits (96), Expect = 1e-11
Identities = 163/236 (69%), Gaps = 5/236 (2%)
Strand=Plus/Plus
Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908
||||| || || ||||||||| | | || || ||||||||||||||||| || | |||
Sbjct 9331 TTAAG-GGAAAGGAAGGTCGTCTGCGTGGTAACTTGATGGGAAAACGTGTTGACTTTTCT 9389
Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968
|||||||| || ||||| ||| || || | | | ||||||| |||||||||
Sbjct 9390 GCACGTACTGTCATTACAGGTGACCCTAACTTATCCTTGGATGAAGTCGGTGTTCCTAGG 9449
Query 668969 ATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAGTATTTG 669028
| |||||||| || || |||| | |||| || || | | ||||||| | | ||
Sbjct 9450 AGTATTGCTAGAACACTGACTTATCCGGAAACGGTTACTCCATACAATATTGGGAAACTG 9509
Query 669029 ACTCAATTAGTGAAAAATGGT--AAAAGAGTATATCCGGGTGCCAATTTTGTAATC 669082
||| | || | |||||| || ||| ||||||| || || | ||| |||
Sbjct 9510 CACCAACTTGTTCAGAATGGTCCCAACGAG--CATCCGGGAGCTAAATATGTTATC 9563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780794610955360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |