Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq46 430 2e-115 seq105 147 3e-30 seq39 123 3e-23 seq73 107 2e-18 >seq46 Length=1090308 Score = 430 bits (476), Expect = 2e-115 Identities = 1050/1585 (66%), Gaps = 11/1585 (1%) Strand=Plus/Minus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| |||||||| || || ||||| || || || | ||| || || || || || Sbjct 2981 CTTCTCATCTTCCTCCTTGTACTTCTCGGCCTCAGCCAACATGCGCTCGATTTCCTCCTT 2922 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 || | | ||||| || || | || |||||| | ||| || || | | |||| || Sbjct 2921 GGAGAGACGGCCCTTGTCGTTGGAGATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTC 2862 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 |||| || |||| || ||||| ||||||| |||||| | || | ||| ||||| Sbjct 2861 AAGAGCAGAGACGTTCATGATTCCATTGGCATCAAGATCGAAGGTAACCTCAATCTGTGG 2802 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 ||| | || |||| ||| ||||| || | || || | || || || |||| || Sbjct 2801 AACACCACGTGGAGCGGGTGGGATACCGGTAAGCTCGAACTTGCCGAGCAAGTTGTTGTC 2742 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | | | ||||||||| || |||||| || ||| |||| || || || Sbjct 2741 CTTGGTGCGAGCACGTTCACCCTCGAAGACTTGGATGAGCACACCAGGCTGGTTGTCGGA 2682 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || ||||||| || ||||| | ||| || || || |||| ||||| | | Sbjct 2681 GAAGGTGGAGAAGACTTCGGACTTCTTGGTTGGGATAGTAGTGTTTCGGGGAATGAGCTT 2622 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||| ||||| ||| |||| || ||||||| || | || || | ||| || Sbjct 2621 GGTCATCTGGCCACCAGCAGTCTCGATACCGAGAGACAATGGGGCAACATCGAGGAGCAA 2562 Query 6985 CAGGTCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 | || | || | | | ||||| | | ||| || || ||||| | || Sbjct 2561 GATCTCGTTGGTGGACTTGGAGCTGGTATCACCAGAGAGGATAGCAGCCTGGACAGCAGC 2502 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| || || ||||| |||||||| || | || || | || || ||||| || | Sbjct 2501 ACCGTAGGCAACAGCCTCGTCGGGGTTGATAGACTTGTTGGGCTCCTTGCCGTTGAAGAA 2442 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | | | | || ||| | ||||| || || || |||||||| | || || || Sbjct 2441 ATCGGTGATGAGCTTCTGGATTCTTGGGATACGGGTAGAGCCACCGACGAGGACAATCTC 2382 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | || | || || |||||||| | ||| | | ||||| || || | | Sbjct 2381 GTGGACGCTGGACTTGTCGATCTTAGCATCTTGCAAGACACGCTCGACTGGCTCGAGAGT 2322 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 | ||| | |||| || |||||||| || | |||||||| ||||| || ||||| Sbjct 2321 GGATCTGAAGAGGTCCTGGCAAAGTTCCTCGAATCTGGCACGGGTGATGGAAGTGTAGAA 2262 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 ||||| || || || | || || || || |||| || || || | ||||| | || Sbjct 2261 GTCAACACCCTCATAGAGGGAGTCGATCTCGATGGAGGTCTGAGCAGCAGAAGAGAGAGT 2202 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || ||||| || || ||||| | |||||| || ||||| | | || ||| || Sbjct 2201 ACGCTTGGCACGCTCGCAAGCAGTTCGGAGACGACGGAGAGCACGTGCGCTAGAGGAGAT 2142 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 ||| ||||| | || || || ||||| | |||||| | ||| | ||||| Sbjct 2141 ATCCTTCTTGTACTTGCGCTTGAACTCGTTGACGAAGTGGTTGACGAGACGGTTGTCGAA 2082 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || ||||| |||||||| ||||| || || || | |||||||| ||||||||| |||| Sbjct 2081 GTCCTCACCTCCCAAGTGGGTATCACCAGCAGTGGACTTGACTTCGAAGATACCTTCTTC 2022 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 ||| | | | |||||||| || || |||||||| || || || ||||| ||||| Sbjct 2021 GATGGTAAGGAGGGAAACATCGAAAGTTCCACCACCAAGATCGAAGATGAGGACGTTTCG 1962 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | || ||||| ||||||||||| || ||||| ||||| || || || || || Sbjct 1961 CTCACCCTCAACCTTCTTGTCGAGACCGTAAGCAATAGCAGCCGCGGTGGGCTCGTTGAT 1902 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 || | ||| ||||| ||||| || | ||||| || || || |||| || || Sbjct 1901 GATTCTGAGAACGTTCAAACCAGCGATCAAGCCAGCATCCTTGGTGGCCTGTCTCTGGGA 1842 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| |||||||| ||||| || ||||| |||| | || | ||| || || | Sbjct 1841 GTCGTTGAAGTAGGCTGGGACGGTGACGACGGCGTTGTTAACGGTACCACCAAGGTAGGC 1782 Query 7762 TTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 || || | || ||| ||| ||| ||||| || || |||||||| | | |||| Sbjct 1781 CTCAGCAGTCTCACGCATCTTTACCAAG-ACCATGGAAGAGATCTCTTCTGGAGTGAACT 1723 Query 7821 GTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAA 7880 | || || ||||| || || | || ||||| | ||| || ||| | | | | || Sbjct 1722 GCTTGGTCTCACCCTTGAATTGGACCTCAATGAGGGGCTT-TCCTC--CCTTGTCAACAA 1666 Query 7881 CCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGA 7940 |||| | | | | ||||||||| | ||||| | |||| ||||| | || | Sbjct 1665 CCTTGAATGGGAAGTGCTTCATATCGGCCTGGACTTCAGGGTCGTTGAACTTGCGGCCAA 1606 Query 7941 TAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCG 8000 | | ||||| ||||| || || |||||| | ||||||||| ||| ||||| || | Sbjct 1605 TCAATCGCTTGGCATCGAAGACAGTGTTTGCTGCGTTCATGGCGACTTGATTCTTAGCAG 1546 Query 8001 CGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGAT 8060 | || ||||| ||||| || || || || || || ||| |||| || |||||||| | Sbjct 1545 CATCACCGATCAGACGCTCCGTA---TCGGTGAAGGCAACGAACGAGGGCGTCGTTCGGT 1489 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || |||||||| || |||||||| | | ||| | | | |||| || || || || | Sbjct 1488 TACCCTGGTCGTTGGCGATAATTTCGATTCTGTCATCTCGAAAGACACCTACACAGGAGT 1429 Query 8121 ACGTTGTTCCTAAATCAATACCGAT 8145 | || ||||| | ||||||||| || Sbjct 1428 AGGTCGTTCCAAGATCAATACCTAT 1404 >seq105 Length=247759 Score = 147 bits (162), Expect = 3e-30 Identities = 240/340 (71%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||||| |||||| || | ||| Sbjct 111253 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCGGTCGAAAGGACTTCGAACACACCA 111194 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || ||||| || || || ||||| || || | || | | Sbjct 111193 CGGTCGATGGAAAGAAGGGAGACATCGAAAGTTCCTCCACCGAGATCGTA---GACAATG 111137 Query 7577 TTCGTATCGT-CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | ||| | | | ||||||| || |||||||| ||||| || |||||||| || Sbjct 111136 ATC-TGGCGTTCACCCTCAGTCTTATCCAGGCCGTACGCAATAGCGGCAGCCGTTGGCTC 111078 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || | ||||| || ||| |||| || |||||||| | ||||| || || || |||| Sbjct 111077 GTTGACGATACGCAGGACA-TTCAATCCGGCAATAGTACCAGCATCCTTGGTGGCCTGTC 111019 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 || |||||||||||||| ||||| || || || |||| ||||| ||||| || | Sbjct 111018 TCTGGTTGTCGTTAAAGTAGGCAGGGACAGTGACCACTGCGTGAGTGACCTTCTTGCCCA 110959 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 || || || |||| || ||||| ||| ||| ||||| Sbjct 110958 AGTAAGACTCTGCGACCTCCTTCATCTTGCCAAGGACCAT 110919 >seq39 Length=1363582 Score = 123 bits (136), Expect = 3e-23 Identities = 231/331 (70%), Gaps = 14/331 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| ||||| || ||| | ||||| || || | || Sbjct 613449 ATCGAAATCCTCACCACCCAAGTGAGTATCACCATTGGTAGACTTGACCTCGAACACTCC 613508 Query 7516 TCCTTCAATGTTT-AACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 |||| ||| || || || | ||| || || || ||||| || ||| | | | Sbjct 613509 --CTTCTGGATTTCAAGGACAGAGATATCGAAAGTTCCTCCACCAAGATCATAGACGGCA 613566 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | || |||| || || ||| || |||||||| || | ||| || || ||||| Sbjct 613567 ATGATCTTATCCTCATC------CTTTTCAAGACCGTAAGCAAGAGCGGCGGCAGTTGGC 613620 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTG 7692 || || | || ||| ||| ||||||||||||||| | ||| ||||| || || || || Sbjct 613621 TCGTTGACAACACGCAGAACGTTCAGGCCAGCAAT-TTGGCCAGCATCCTTGGTTGCCTG 613679 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTT-TCTTAC 7751 ||||| || || |||||||| ||||| || || || |||| | ||| || ||| | Sbjct 613680 ACGTTGTTGGTCATTGAAGTAGGCTGGGACAGTGACAACTGCGTTC-TGAATTGGCTTGC 613738 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTT 7782 ||| || ||||| || | || ||||| || Sbjct 613739 TGAGGTAGGATTCAGCAGTCTCCTTCATCTT 613769 >seq73 Length=484926 Score = 107 bits (118), Expect = 2e-18 Identities = 398/618 (64%), Gaps = 17/618 (3%) Strand=Plus/Minus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCC 105522 || || |||||||| | | |||||||||| | ||||| || |||| ||||| | Sbjct 51198 TCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACAC 51139 Query 105523 TGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCT 105582 | || ||||| | || | ||| | || | ||||| | |||||||| | ||| Sbjct 51138 TCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCG 51079 Query 105583 GGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAA 105642 |||||||||| ||| | ||||| || || | | || || | ||| |||||| Sbjct 51078 GGAATCCACAAGGCATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTT 51019 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 | | ||||| || |||| | ||| ||||||||||| || | |||| |||| || | Sbjct 51018 CTGAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAA-AGGC 50960 Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756 | | ||||| || |||||| |||||||| || || ||| | || || Sbjct 50959 AC--CAGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGC 50902 Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816 | |||||| | |||||||| || || || || || ||| | || | | || Sbjct 50901 AGCATTGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCT 50842 Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGATACGCGCACAC 105873 || | ||| | | | ||||| || || || ||| | | ||| ||||| Sbjct 50841 CGGATTCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATA---GCACAT 50785 Query 105874 TCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACAC 105933 || | ||||| || ||||| || || || |||||||| | | | ||||| || Sbjct 50784 GTCTTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCAT 50725 Query 105934 GATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 |||||||| || | ||| || || |||||| |||| || || || | ||||| |||| Sbjct 50724 GATGACATCTG-AGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAA 50666 Query 105993 CAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAAT 106052 | ||||| | | | |||||| || | || |||||||| | ||||| || Sbjct 50665 GTACTTGTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGAT 50606 Query 106053 ACCAATAGCGACGCGCAT 106070 ||||| ||| || ||||| Sbjct 50605 ACCAACAGCCACACGCAT 50588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128354070400