Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq73 277 2e-69 seq24 111 2e-19 seq16 100 3e-16 >seq73 Length=484926 Score = 277 bits (306), Expect = 2e-69 Identities = 1068/1656 (64%), Gaps = 45/1656 (3%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 |||||| ||||| |||||||| ||||| |||||| ||||| ||||| | | ||| | Sbjct 52204 GTTCATTGACTGGGACTGATCAATGAAAGCACCACGGTCAGCAGCCATCTGCACAATGTT 52145 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || || | ||| |||||||| |||||||| | | ||| ||||| || |||| Sbjct 52144 ACGCT---GAGAAATCTCCCAGACGGTCTTGTAGAGAGCCTTAATATCTGATGGGATGTT 52088 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676 || || || || || |||||| | | ||| | | |||||| | | ||||| Sbjct 52087 GGGAATATTCTGGATGGAACCACCATCAGCGATAATGCGGTTCTTCATGTTGTCAGACCA 52028 Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGC 109736 ||| || | | ||||| | | ||| ||| ||||| || || || || Sbjct 52027 GAGTCCCATATCGACAAGATCCTTGAGAAGCCAAGGGTTCACCACCTGGAACTCTCCTGC 51968 Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796 ||| || ||| ||| ||||| | ||||| || || || ||||| ||| || || Sbjct 51967 AAGCACACGGCGGGAGTAAATGTTGGAGGTGTATGGCTCAAAGCACTCGTTGAAACCAAG 51908 Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTT 109856 ||| || |||| || || ||||| ||||| | ||||||||||| |||| || | Sbjct 51907 GATCTGGCTAGTGCTGGCAGTTGGCATAGGAGCAACCAGAAGACTGTTGCGGATGCCATG 51848 Query 109857 CGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACC 109916 ||| | | ||| || |||||||| | || | || | | ||| Sbjct 51847 TTGCTTGATCTGCTGCTTCAAGCTATCCCAATCCCAGAGATCTGTAGGAGT-GACTC--- 51792 Query 109917 ATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTA 109976 |||||||||| |||||| | || | | ||||| || || | | |||| || Sbjct 51791 --CCCACATATCATATTGAAGCTCTCCTTTCGACGCAGGGGATCCTTCATATGTCTCATA 51734 Query 109977 CGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036 || || | || || ||| | ||| ||||| || || | || || |||||||| Sbjct 51733 CGGGCCATTAATCTTGGCAAGCTCTACGGAAGCAGTAAGAGCACCGTGGTAGATAGTCTC 51674 Query 110037 AAAAATATGAGCATTCATGAGGCGA-GACTCTTCACAGTCGAAGGGAAGAC-CACAAAGA 110094 || || ||| ||| | || || | ||| |||| || |||| || || | | Sbjct 51673 GAAGATTTGAATATTGA-GATGCTTTGCCTCAGGTGAGTCAAAAGGAACACGCAGAGCCA 51615 Query 110095 ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAG 110154 | ||| ||||||| | ||||| ||||| | ||||||| ||||| | ||| | Sbjct 51614 AGAAAG-CATCCGCCAATCCCTGTACACCAACTGCAATGGGACGATGACGGAAGTT-GCT 51557 Query 110155 CGTCGA-GCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213 | || || | |||||||| |||| ||||||| | || | ||||| || Sbjct 51556 CTTCCTTGCCTCTGGGACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGT 51497 Query 110214 CACAGTCTTCGT-GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGA 110272 ||| ||| | || ||| || || || | | | || | || | | | ||| | Sbjct 51496 AACAA-CTTGGACGACTTCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCATATCCA 51438 Query 110273 CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGT 110332 || | |||| || |||||||| || | ||||| |||| | ||| || | || Sbjct 51437 CAAAGGTGGGAAGTGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGT 51378 Query 110333 ATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCG 110392 |||| | ||| || || ||||||||||| || || |||| ||||||||| || Sbjct 51377 ATTCGACAATCTCTGTGCACAAGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGTTGC 51318 Query 110393 ATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452 ||| |||||| |||||||| ||||||||| ||||| | ||||| || || |||| | Sbjct 51317 TCTTGCGGTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTT 51258 Query 110453 TGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT--CCTC 110510 || |||| | ||| | | || || || | || | | |||| |||| Sbjct 51257 CAAGGATGGAATACCAGAGCTTTTGAGCCTTTACGGT--CTTTCG---GCCCTTGCCCTC 51203 Query 110511 ---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTT 110567 ||| ||||| |||||| | ||||| || | |||||| ||||| | ||||| Sbjct 51202 GCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGG 51143 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627 || | ||||| | |||| ||| | ||| | |||||||||||||||||| || Sbjct 51142 ACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAG 51083 Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687 || |||||||||| || |||| || || || |||| | || || | ||| || || Sbjct 51082 ATCGGGAATCCACAAGGCATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATT 51023 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747 | || || | || || | || ||| | ||||||||| || || |||| ||| | Sbjct 51022 CTTTCTGAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAA 50963 Query 110748 GGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGAC 110801 || || | |||| ||| | || | |||||| | |||||| ||||| || Sbjct 50962 GGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAAC 50906 Query 110802 CCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATT 110861 | ||||| || | ||| |||| || ||| || || || ||| ||| | | Sbjct 50905 ACGCAGCATTGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGT 50846 Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 || || || |||||||| | |||||| ||||| || ||| ||| ||||| Sbjct 50845 AGCTCGGATTCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACA 50786 Query 110922 C-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980 ||| | || ||| |||| ||||||||||| ||| |||| | | | || |||| Sbjct 50785 TGTCT-TCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGC 50727 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040 | || |||||||||| |||| ||||| ||| ||||||||||||| | ||||| ||| Sbjct 50726 ATGATGACATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGA 50667 Query 111041 ACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098 || |||| |||||| ||||||||| |||| |||||| | ||||| || || Sbjct 50666 --AGTACTTGTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATG 50609 Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGG 111134 ||||||| || || ||||||| ||| | ||| || Sbjct 50608 GATACCAACAGCCACACGCATGATCATGTGTTGTGG 50573 >seq24 Length=853129 Score = 111 bits (122), Expect = 2e-19 Identities = 338/512 (66%), Gaps = 9/512 (2%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || ||||| |||| ||| || ||||| || ||||||||| |||||||||| || ||||| Sbjct 483147 TAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTCTCCATG 483206 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || ||| || || || ||| | ||| ||||| ||| ||| || Sbjct 483207 AAGTCGAAGGGGTTTGCTGACTTGTAGTATTTCTCGTT-ACCAAGAGCCGTCAAAAGTCG 483265 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||| | ||| |||||||||||| ||| | || ||||| || | | ||| Sbjct 483266 ATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAGTAAGGCACA 483325 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTT-CTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||||||| || | ||| ||||| ||| || | |||||||| | | ||| | Sbjct 483326 GGGGAGAGCCTCTGTTAAGAA-TTCTTGCTCAATGGCAACAGCTTCGGTGATGATATCCT 483384 Query 119446 GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTT 119505 | | || | | | ||| || ||||| | ||| | ||||| || Sbjct 483385 GGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCATGCAAAGTCGG 483444 Query 119506 GATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTC 119565 ||| || || || || |||||||||||||| || ||| || |||| |||||| | Sbjct 483445 TATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACCAGCCATGAGGC 483504 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625 | | ||||| ||||||||||| || |||| ||| ||||| ||||| ||||| Sbjct 483505 CACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAATGCCTTCCACGG 483564 Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC--GAA-CCACTTGAGA 119681 ||||| || | | ||| | || ||||| || |||||| ||| ||| | | Sbjct 483565 CAGCGAATGCAACCAAACGTTGGGC-GAAGGTGGACTTCTTGTCTTGAATCCATCTAACT 483623 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGAC 119713 ||||| | |||||| || ||||||||||| Sbjct 483624 GCCCAATCGGCCTTCTTCTTGATGCAGGGGAC 483655 >seq16 Length=379189 Score = 100 bits (110), Expect = 3e-16 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||||| | || ||||||||||||||||| | || || ||| | | | ||| Sbjct 192720 TTACCAATTGCATCAATCTCATCGATGAAGATAATGCATGGTGTGCTCTTTCTTGCGGTA 192661 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 |||| || || || || | || |||||||| |||||||| || ||||| | | Sbjct 192660 GCGAAGAGATCCCGCACTCTGGAGGCACCAACACCGACGAACATTTCCACGAACTCGGAA 192601 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || || | ||||| |||||| || | |||||||||||| | || || ||||||| Sbjct 192600 CCGCTGA-CGCTGAA-GAAGGGGACCTGCGACTCACCAGCGGTAGCCTTGGCTAGGAGAG 192543 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 ||||||| |||||||| | |||| | | || || || ||||||||||||||| Sbjct 192542 TCTTACCAGTACCAGGAGGTCCAGACAAGATAGCTCCTCGAGGGATCTTGGCACCA 192487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971877168000