Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq9 136 5e-27 seq74 93.3 5e-14 >seq9 Length=1359104 Score = 136 bits (150), Expect = 5e-27 Identities = 192/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||||| | |||| ||| | ||||| | ||| | || |||||||| ||||| Sbjct 232216 TGATATTGCGTTCGGTAACTCGCAGCGATTTGGCGTACCTTTTGGTTATGGAGGACCTCA 232275 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 153865 ||| ||||| |||||| | | || || |||||||||||||| || || | ||| | || Sbjct 232276 TGCGGCATTTTTTGCAGCTGCTGAAAAATATAAGAGAAAGATTCCAGGACGTATTATTGG 232335 Query 153866 TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 153925 | || ||| || || | | ||| | || ||||| ||||||| |||||||| Sbjct 232336 TGTTTCGAAAGACAGGCTTGGAGACAGAGCGAATAGGCTAGCATTACAGACCAGAGAGCA 232395 Query 153926 GCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAA 153985 |||||| | | || || || ||||| ||| | || || || ||||| ||| |||| || Sbjct 232396 GCATATTCGACGGGAGAAGGCTACCAGCAACGTATGTACGGCACAGGCGCTGTTGGCAAA 232455 Query 153986 TATGTCTGGATTCTATGCAGCATATCATGG 154015 |||| || |||||||||| ||||| || Sbjct 232456 TATGAGTGCATTCTATGCAATTTATCACGG 232485 >seq74 Length=81004 Score = 93.3 bits (102), Expect = 5e-14 Identities = 185/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 |||||| || | || | | ||| | || ||| | || | || ||||| || || || Sbjct 22858 TGATATCGCCTTCGGAAATGCGCAGCGCTTCGGTGTACCATTTGGCTATGGTGGCCCCCA 22917 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG- 153864 ||||||||||||||| || | ||||||| | ||||||| || || || | | | Sbjct 22918 TGCTGCATTCTTTGCTGTAAGCCAGAAGTATATGCGAAAGATGCCCGGAAGGTTGATTGG 22977 Query 153865 -GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923 ||| || | | | || || |||| ||| | || | || | ||||| | || Sbjct 22978 CGTCTCGAAGGACAGACTG--GGGAATACCGCACTCCGACTGGCTTTGCAGACGCGCGAA 23035 Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCT 153983 ||||| || | ||||| || |||||||| || |||| || || || ||||| ||||| Sbjct 23036 CAGCACATTCGTAGAGAGAAGGCAACCAGCAATGTCTGTACGGCGCAAGCACTTCTGGCA 23095 Query 153984 AATATGTCTGGATTCTATGCAGCATATCATGG 154015 |||||| || ||| ||||| | ||| ||||| Sbjct 23096 AATATGAGTGCATTTTATGCGGTATACCATGG 23127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579208745510400