Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq46 161 2e-34
seq73 104 5e-17
>seq46
Length=1090308
Score = 161 bits (178), Expect = 2e-34
Identities = 158/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||||||||| || |||||||| || ||||| || | ||||||| ||||| || |||||
Sbjct 104552 GTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCAAGCTG 104611
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| || || |||||||| |||||||| || || ||||| ||||| ||
Sbjct 104612 CTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTT 104671
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| ||||||||||| || ||| || |||||||| | ||||| || ||
Sbjct 104672 GGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTGCCAGT 104731
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| ||| || || || | ||||||
Sbjct 104732 GAGAGTCTTGACAAAAATTTGCAT 104755
Score = 136 bits (150), Expect = 9e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| |||||| ||| ||||| || ||||| ||| | ||||| ||||| ||
Sbjct 104318 AACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCGTCCATCCTC 104377
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || ||||| || || || |||||||| || || || || || || |||||
Sbjct 104378 GAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATCTTG 104437
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| || |||||||| || || ||||| | ||||| |||||
Sbjct 104438 AATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCTT 104497
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || ||||| | ||||||
Sbjct 104498 ACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| |||||| || || || || ||||| ||| | ||| | ||||| ||||||||
Sbjct 104096 GTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGCTG 104155
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||| || || || |||||||| || || || || || ||||| || || ||
Sbjct 104156 CTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTT 104215
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| |||||||| ||||| ||||||||| || || | |||||||| ||
Sbjct 104216 AGACTTGACGTTGTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGT 104275
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
||| || || ||||| | |||||
Sbjct 104276 CAATGTCTTCACGAAAATCTGCAT 104299
Score = 122 bits (134), Expect = 2e-22
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| || ||||| || || || || || |||| ||| |||| || || |||
Sbjct 104775 ACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGTTCGGCCGTCCTCG 104834
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || ||||| || || || ||||| || ||||||||
Sbjct 104835 AGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCTTGG 104894
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| || |||||||| || || || ||||| || | |||||
Sbjct 104895 ATCTTGCTCTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 104954
Query 195112 CCTGT 195116
|| ||
Sbjct 104955 CCGGT 104959
>seq73
Length=484926
Score = 104 bits (114), Expect = 5e-17
Identities = 193/281 (69%), Gaps = 2/281 (1%)
Strand=Plus/Plus
Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648
||||| ||| | |||| | ||||||| ||||||||||| || | | || || || |||
Sbjct 51059 TTCTATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTGAGAAAAACGGAGAGTGG 51118
Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708
| ||| | ||||| ||||| ||||| || | ||||| || || ||||| ||
Sbjct 51119 ACCCTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATGTCTACGGAGATGAGTTTGAA 51178
Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767
|| | || || | || || ||||| ||| ||| |||| ||| ||||| ||| |
Sbjct 51179 GCTTTGTACGAGAAGTATGAGCGCGAGGGCAAGGGCC-GAAAGACCGTAAAGGCTCAAAA 51237
Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827
|| ||| || |||||||| || ||| |||| || | || || || |||||
Sbjct 51238 GCTCTGGTATTCCATCCTTGAAGCACAAACCGAGACTGGAAACCCATTCATGCTCTACAA 51297
Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868
|||||| | |||||||| |||||||||||| | ||||
Sbjct 51298 GGATGCGTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 51338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109473639469520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |