Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq46 100 2e-16 seq22 89.7 3e-13 >seq46 Length=1090308 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || |||||| || ||||| ||||| || || |||| |||| || Sbjct 104547 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCA 104606 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || || ||||| | || | ||||||||||| | Sbjct 104607 AGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCCTGA 104666 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | || || || | ||| ||||| || Sbjct 104667 ATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTG 104726 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| ||||| || |||||| Sbjct 104727 CCAGTGAGAGTCTTGACAAAAATTTGCATA 104756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||| | ||||| || || || ||||| ||||| | || | ||||| |||| | Sbjct 104318 AACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAAG-TTCGTCCATCCT 104376 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | ||||| || || || || || || || || ||||| | || | |||||||| || Sbjct 104377 CGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATCTT 104436 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || ||| | || | || | |||||| || | ||| ||||| | Sbjct 104437 GAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCT 104496 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || ||||||||||| || ||||| |||||| Sbjct 104497 TACCAGTGAGAGTCTTGACGAAGATTTGCATA 104528 >seq22 Length=1308897 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| || ||||| || |||||||| Sbjct 1149356 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAG 1149297 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || ||||| | || | ||||||||||| ||||| ||||| || Sbjct 1149296 ATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 1149239 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||| || || | ||| || || || |||||||| ||||| Sbjct 1149238 --TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTT 1149181 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 1149180 CACGAAGATCTGCAT 1149166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631384375680