Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq73 210 2e-49
>seq73
Length=484926
Score = 210 bits (232), Expect = 2e-49
Identities = 549/826 (66%), Gaps = 20/826 (2%)
Strand=Plus/Minus
Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052
||| || || |||||||| ||||| || || ||||||| || | || | ||||| |||
Sbjct 51310 GTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGAT 51251
Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAG-CTCTAG--CTTTATTATCATGTTCGTA 48109
|| | ||| | | |||||||| | | || | | | || || | || ||
Sbjct 51250 GGAATACCAGAGCTTTTGAGCCTTTA---CGGTCTTTCGGCCCTTGCCCTCGCGCTCATA 51194
Query 48110 TTTA--GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCA 48167
|| ||| | | |||| ||| ||||| || || |||| ||| |||||||| |||
Sbjct 51193 CTTCTCGTACAAAGCTTC--AAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCA 51136
Query 48168 TTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGT 48227
|| |||||||||| | ||| || | | || | || || |||| || | ||| ||
Sbjct 51135 TTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGA 51076
Query 48228 ATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT 48286
||||| | || ||| || | ||| | | | | ||| || || ||| |||| || |
Sbjct 51075 ATCCACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCT 51017
Query 48287 AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACC 48346
|| || || || || | | |||||| |||||||| || | || || || | ||||
Sbjct 51016 GAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACC 50957
Query 48347 TGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACAT 48406
|| || || ||||| |||||||| | ||||||||| || ||||| |||| | | |||
Sbjct 50956 AGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCAT 50897
Query 48407 TGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC---T 48463
||| ||||||||||| || | ||| ||||| || ||||| || ||| |||||| |
Sbjct 50896 TGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGAT 50837
Query 48464 TATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT 48523
| | | | |||| | ||| || ||||| || | || || || | |||||| ||
Sbjct 50836 TCTGTGGAT-ATTG--AGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTT 50780
Query 48524 AAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA 48583
||||||||||| || || || || || || || |||||| || || || || ||
Sbjct 50779 CAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGA 50720
Query 48584 CATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643
||| || | ||| ||||| | | | || | ||| ||||| ||||| | || | ||
Sbjct 50719 CATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTT 50660
Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703
| || | ||| || ||||| || || | || || ||||| ||| ||||| |
Sbjct 50659 GTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAAC 50600
Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763
|| |||||||| | ||| | ||| || | ||||| | |||||| | | ||
Sbjct 50599 AGCCACACGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAG 50540
Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807
||||| |||||||| || || |||||||| | ||| |||||
Sbjct 50539 GTATGAACGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA 50494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562104865238400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |