Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq73 210 2e-49 >seq73 Length=484926 Score = 210 bits (232), Expect = 2e-49 Identities = 549/826 (66%), Gaps = 20/826 (2%) Strand=Plus/Minus Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 ||| || || |||||||| ||||| || || ||||||| || | || | ||||| ||| Sbjct 51310 GTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGAT 51251 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAG-CTCTAG--CTTTATTATCATGTTCGTA 48109 || | ||| | | |||||||| | | || | | | || || | || || Sbjct 51250 GGAATACCAGAGCTTTTGAGCCTTTA---CGGTCTTTCGGCCCTTGCCCTCGCGCTCATA 51194 Query 48110 TTTA--GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCA 48167 || ||| | | |||| ||| ||||| || || |||| ||| |||||||| ||| Sbjct 51193 CTTCTCGTACAAAGCTTC--AAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCA 51136 Query 48168 TTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGT 48227 || |||||||||| | ||| || | | || | || || |||| || | ||| || Sbjct 51135 TTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGA 51076 Query 48228 ATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT 48286 ||||| | || ||| || | ||| | | | | ||| || || ||| |||| || | Sbjct 51075 ATCCACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCT 51017 Query 48287 AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACC 48346 || || || || || | | |||||| |||||||| || | || || || | |||| Sbjct 51016 GAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACC 50957 Query 48347 TGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACAT 48406 || || || ||||| |||||||| | ||||||||| || ||||| |||| | | ||| Sbjct 50956 AGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCAT 50897 Query 48407 TGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC---T 48463 ||| ||||||||||| || | ||| ||||| || ||||| || ||| |||||| | Sbjct 50896 TGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGAT 50837 Query 48464 TATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT 48523 | | | | |||| | ||| || ||||| || | || || || | |||||| || Sbjct 50836 TCTGTGGAT-ATTG--AGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTT 50780 Query 48524 AAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA 48583 ||||||||||| || || || || || || || |||||| || || || || || Sbjct 50779 CAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGA 50720 Query 48584 CATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643 ||| || | ||| ||||| | | | || | ||| ||||| ||||| | || | || Sbjct 50719 CATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTT 50660 Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703 | || | ||| || ||||| || || | || || ||||| ||| ||||| | Sbjct 50659 GTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAAC 50600 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 || |||||||| | ||| | ||| || | ||||| | |||||| | | || Sbjct 50599 AGCCACACGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAG 50540 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 ||||| |||||||| || || |||||||| | ||| ||||| Sbjct 50539 GTATGAACGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA 50494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104865238400