Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq46 123 2e-22
seq59 105 5e-17
>seq46
Length=1090308
Score = 123 bits (136), Expect = 2e-22
Identities = 453/707 (64%), Gaps = 3/707 (0%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||||| |||||||| ||||||||||||| | ||||| || |||| || |||| | ||
Sbjct 2160 GCTCTCCGTCGTCTCCGAACTGCTTGCGAGCGTGCCAAGCGTACTCTCTCTTCTGCTGCT 2219
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|| ||| | || || | || || | | |||||| |||| | | || | || |
Sbjct 2220 CAGACCTCCATCGAGATCGACTCCCTCTATGAGGGTGTTGACTTCTACACTTCCATCACC 2279
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| |||| ||| || || |||| || ||||| ||| || | || ||||| ||
Sbjct 2280 CGTGCCAGATTCGAGGAACTTTGCCAGGACCTCTTCAGATCCACTCTCGAGCCAGTCGAG 2339
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
| || || |||| | ||||| || || |||| || || || ||||| || || |||
Sbjct 2340 CGTGTCTTGCAAGATGCTAAGATCGACAAGTCCAGCGTCCACGAGATTGTCCTCGTCGGT 2399
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAA 552194
|| ||||| | || || | ||| | | | | | || ||||| || || |
Sbjct 2400 GGCTCTACCCGTATCCCAAGAATCCAGAAGCTCATCACCGATTTCTTCAACGGCAAGGAG 2459
Query 552195 TTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCT 552254
|| | | | || || || |||||||||||||| ||||| || | || || |||
Sbjct 2460 CCCAACAAGTCTATCAACCCCGACGAGGCTGTTGCCTACGGTGCTGCTGTCCAGGCTGCT 2519
Query 552255 ATTCTTTCTGGACA-AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACT 552311
|| || ||||| | | | | | || | || || | || | || | |||||| |
Sbjct 2520 ATCCTCTCTGGTGATACCAGCTCCAAGTCCACCAACGAGATCTTGCTCCTCGATGTTGCC 2579
Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371
|| | ||||| ||| | || || | ||| || ||||| || || || ||||
Sbjct 2580 CCATTGTCTCTCGGTATCGAGACTGCTGGTGGCCAGATGACCAAGCTCATTCCCCGAAAC 2639
Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431
|||||||| || || || || || || || || | || || || || ||| |
Sbjct 2640 ACTACTATCCCAACCAAGAAGTCCGAAGTCTTCTCCACCTTCTCCGACAACCAGCCTGGT 2699
Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491
|| || ||| | || || || ||| | ||| || || || || || ||
Sbjct 2700 GTGCTCATCCAAGTCTTCGAGGGTGAACGTGCTCGCACCAAGGACAACAACTTGCTCGGC 2759
Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551
| || | | ||||| || || ||||| ||||| || || || ||||| |||||
Sbjct 2760 AAGTTCGAGCTTACCGGTATCCCACCCGCTCCACGTGGTGTTCCACAGATTGAGGTTACC 2819
Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|||||| | |||||||||||||| |||| || ||||| ||| ||
Sbjct 2820 TTCGATCTTGATGCCAATGGAATCATGAACGTCTCTGCTCTTGAGAA 2866
Score = 98.7 bits (108), Expect = 8e-15
Identities = 378/591 (64%), Gaps = 2/591 (0%)
Strand=Plus/Plus
Query 549993 CTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAG 550052
|||||||||| ||| | ||||| || || ||||| ||||| | | | ||| | |
Sbjct 1402 CTATAGGTATTGATCTTGGAACGACCTACTCCTGTGTAGGTGTCTTTCGAGATGACAGAA 1461
Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112
| |||||||| ||||| || || |||||| |||| || || || | ||| | ||||| |
Sbjct 1462 TCGAAATTATCGCCAACGACCAGGGTAACCGAACGACGCCCTCGTTCGTTGCCTTCACCG 1521
Query 550113 AAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATA 550172
| || || | | | | |||||||| || || |||||| | | || | | || |
Sbjct 1522 ATACGGAGCGTCTGATCGGTGATGCTGCTAAGAATCAAGTCGCCATGAACGCAGCAAACA 1581
Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232
|| | || ||||| || || || ||||| | | || || || | || ||||| |
Sbjct 1582 CTGTCTTCGATGCCAAGCGATTGATTGGCCGCAAGTTCAACGACCCTGAAGTCCAGGCCG 1641
Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA 550292
|||||||||| | || ||| | ||||| | ||||| || |||| || |
Sbjct 1642 ATATGAAGCACTTCCCATTCAAGGTTGTTGACAAGGGAGGAAAGCCCCTCATTG-AGGTC 1700
Query 550293 CTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351
| | |||| | | || || || | |||||| | || || || ||||| || |
Sbjct 1701 CAATTCAAGGGTGAGACCAAGCAGTTCACTCCAGAAGAGATCTCTTCCATGGTCTTGGTA 1760
Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411
|| ||| | || || || | ||||| |||| | || || | ||
Sbjct 1761 AAGATGCGTGAGACTGCTGAGGCCTACCTTGGTGGTACCGTTAACAACGCCGTCGTCACC 1820
Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471
|| ||||| || || || ||||| || | || || || || |||||||| || |||
Sbjct 1821 GTCCCAGCCTACTTCAACGACTCCCAGAGACAGGCCACCAAGGATGCTGGCTTGATCGCT 1880
Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531
|| | || ||||| | || ||||| || || || || ||||| |||| || || ||
Sbjct 1881 GGTTTGAACGTTCTCAGAATCATCAACGAGCCCACCGCGGCTGCTATTGCTTACGGTCTC 1940
Query 550532 GATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582
|| || | ||| || | || || |||||||| ||| ||| |||
Sbjct 1941 GACAAGAAGGTTGAGGGTGAGCGAAACGTCCTCATCTTCGATCTTGGTGGT 1991
>seq59
Length=381799
Score = 105 bits (116), Expect = 5e-17
Identities = 117/155 (75%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 550379 GTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | || | || || || ||||| || || || || || ||| ||
Sbjct 335809 GTTGGGCAAGAAGGTCACCAAGGCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCA 335868
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||||| ||||||||||| || ||||| || || ||||| ||||| |||||
Sbjct 335869 GCGTCAAGCTACCAAAGATGCTGGTGCCATCGCTGGTCTCAACGTTCTCCGTATCATCAA 335928
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|| || |||||||| || |||| ||||| ||||
Sbjct 335929 CGAGCCAACTGCTGCCGCTATTGCTTATGGTCTTG 335963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029266384674400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |