Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq73 129 1e-24 seq24 111 3e-19 >seq73 Length=484926 Score = 129 bits (142), Expect = 1e-24 Identities = 699/1094 (64%), Gaps = 45/1094 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || ||| |||||||||| ||||| ||||| | ||||| ||| ||||| || Sbjct 51699 GTAAGAGCACCGTGGTAGATAGTCTCGAAGATTTGAATATTGAGATGCTTTGCCTCAGGT 51640 Query 221477 GAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || || || | |||||| | ||||| | || |||| ||||||||| || | | Sbjct 51639 GAGTCAAAAGGAACACGCAGAGCCAAGAAAG-CATCCGCCAATCCCTGTACACCAACTGC 51581 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| | || | |||| | || || ||||| ||||| || |||| || Sbjct 51580 AATGGGACGATGACGGAAGTTGCT--CTTCCTTGCCTCTGGGACGGGGTAGTAGTTAACA 51523 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||| | |||| || | |||| || || ||| ||||||||| Sbjct 51522 TCGATGATCTTGTTCAAGTTCTTGGTAACAACTTGGACGACTTCGTGAAGCTTCTGGAAG 51463 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | || || || || | || | |||||||| | | || |||| | Sbjct 51462 T----CAT-AAGTC----CCATTGTTCATA---TCCACAAAGGTGGGAAGTGCAATAGAG 51415 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTT-GTTG-GTATACTGTATGATCTCTGTACAGA 221771 |||| ||| || || || ||||| ||| | || |||| | | |||||||| || | Sbjct 51414 GCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACA--ATCTCTGTGCACA 51357 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 |||| || ||| || ||||||| || || || |||||| ||| || |||| Sbjct 51356 AGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCACGCATCCT 51297 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||||||||| || || |||||||| || || | || || | |||||| | Sbjct 51296 TGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACCAGAGCT 51237 Query 221892 CTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGAG 221949 | || | || ||| | | | |||||| || ||||| | ||| | || Sbjct 51236 TTTGAGCCTTTACGGTCTTTCGGCCCTTGCCCTCGCGCT---CATACTTCTCGTACAAAG 51180 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | | |||||| || ||||| | || | || || |||||| ||||||||||| Sbjct 51179 CTT--CAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGGACACATCAG 51122 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||| | ||| | | ||||||| ||||||||| || || ||||||| || | Sbjct 51121 GGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCATA 51062 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 |||||||| | | || |||||| || | || || || ||||| | ||||| Sbjct 51061 GAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGGAACTC 51002 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || | ||||||||||| ||||| || |||| || | || || || |||||||| || Sbjct 51001 GAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGACGCTTGTTACC 50942 Query 222190 ACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 ||| |||| || ||| ||| | | | |||||| | || || | || || | || Sbjct 50941 ACCTTGAT-CAACAT-ATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACAATACCA 50884 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACC----GC-CGG-CCCTCAGGTTACTG 222301 || || |||||||||||| |||||| | || || ||| || || || || Sbjct 50883 TTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGTGGATATTG 50824 Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 ||| || || |||||||| | ||||| ||||| || || |||| || || || Sbjct 50823 --AGA----CCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCA 50770 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| || || || ||| ||||| | | | || || || || |||||||||| Sbjct 50769 TAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAGCC 50710 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 | | || | || | || || || ||| || ||||| ||||| | |||||| Sbjct 50709 TGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGACATC 50650 Query 222482 AGATCGTACGTCTC 222495 | | ||| ||||| Sbjct 50649 AAGTTGTATGTCTC 50636 >seq24 Length=853129 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTAC 25868 ||| ||||||||| |||||| ||||| | | ||||| ||| | | ||| | || Sbjct 483652 CCCTGCATCAAGAAGAAGGCCGATTGGGCAGTTAGATGGATTCAAGA-CAAGAAGTCCAC 483594 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 || | | | || |||| || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 483593 CTTCGCCCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCATTTTCTTCAGTGGTTCTTT 483534 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| || ||||| ||||| ||| || || |||| | || ||| |||||| ||||| Sbjct 483533 TGCAGCTATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTGGTCTGACCTTTTCGAACGA 483474 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 ||||||| | |||||||| || || | || ||||| ||||| || Sbjct 483473 GCTCATCTCTCGTGACGAGGGCCTGCATACCGACTTTGCATGCCTTCT 483426 Score = 93.3 bits (102), Expect = 8e-14 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||| |||||||| | ||| ||||||||||||||| |||||||| Sbjct 484039 ATCTGGCAGATGTATAAGAAGGCAGAGGCCTCCTTCTGGACCGCCGAAGAAATTGATCTT 483980 Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || ||| | || |||| | | ||| | Sbjct 483979 TCCAAGGATCTCCACGACTGGAATAACAGACTAAATGATGATGAGCGGTACTTTGTGTCT 483920 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| ||||| || || |||||||| || ||| | Sbjct 483919 CACGTTCTCGCGTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACTTGGTTGAGCGT 483860 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | ||||||||| | | | ||||| |||||||| ||||||||||| Sbjct 483859 TTCAGTGGTGAAGTGCAGATTCCT-GAGGCGCGTTGTTTCTATGGTTTCCAGAT 483807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838298086400