Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq46 125 5e-23
seq59 96.9 2e-14
seq39 87.8 1e-11
>seq46
Length=1090308
Score = 125 bits (138), Expect = 5e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | ||||| ||| |||||| | || || |||| |||||
Sbjct 104534 ACGGAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGT 104593
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||| ||||| ||||| |||||||| || ||||| ||||| || |||||||||||
Sbjct 104594 TCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCC 104653
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
|||||||| |||||||| ||||| ||||| || || | | |||||
Sbjct 104654 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAG 104713
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || || || ||||||||||| || ||||||||
Sbjct 104714 GGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTG 104752
Score = 102 bits (112), Expect = 5e-16
Identities = 354/548 (65%), Gaps = 6/548 (1%)
Strand=Plus/Plus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
|| ||||||||| | ||||| || ||| ||||||| ||| | | | ||| | | |
Sbjct 1404 ATAGGTATTGATCTTGGAACGACCTACTCCTGTGTAGGTGTCTTTCGAGATGACAGAATC 1463
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| || ||||| ||||| ||||| |||| || || || | ||| | || || ||
Sbjct 1464 GAAATTATCGCCAACGACCAGGGTAACCGAACGACGCCCTCGTTCGTTGCCTTCACCGAT 1523
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| || | ||| || || ||||||||||| |||||| || || | | || |||
Sbjct 1524 ACGGAGCGTCTGATCGGTGATGCTGCTAAGAATCAAGTCGCCATGAACGCAGCAAACACT 1583
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || ||||| || |||||||||| || || || | || | ||||| | |||
Sbjct 1584 GTCTTCGATGCCAAGCGATTGATTGGCCGCAAGTTCAACGACCCTGAAGTCCAGGCCGAT 1643
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAA 474629
||| || | || || ||||| | | || || || || || || | |||
Sbjct 1644 ATGAAGCACTTCCCATTCAAGGTTGTTGACAAGGGAGGAAAGCCCCTCATTGAGGTCCAA 1703
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | ||||| || || || || | || ||| | || ||||| ||||| || | |
Sbjct 1704 TTCAAG--GGTGAGACCAAGCAGTTCACTCCAGAAGAGATCTCTTCCATGGTCTTGGTAA 1761
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| ||| | || || ||| | || ||||| || | | || || | ||
Sbjct 1762 AGATGCGTGAGACTGCTGAG-GCCTACCTTGGTGGTACCGTTAACAACGCCGTCGTCACC 1820
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| ||||| || || || || || || | || || || || ||||| || || ||
Sbjct 1821 GTCCCAGCCTACTTCAACGACTCCCAGAGACAGGCCACCAAGGATGCTGGCTTGATCGCT 1880
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||| | || ||| | | || || || || || || || || || ||||||| |||||
Sbjct 1881 GGTTTGAACGTTCTCAGAATCATCAACGAGCCCACCGCGGCTGCTATTGCTTACGGTCTC 1940
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 1941 GACAAGAA 1948
Score = 91.5 bits (100), Expect = 1e-12
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||| |||||||| || | || || || || || || | || || || ||| | ||
Sbjct 104306 ACGGAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTC-GCTCAAAG 104364
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
||| ||| || || ||||| ||||| ||||| ||||| ||||| || || || || |
Sbjct 104365 TTCGTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATAC 104424
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728
| ||||| ||||||||||| || || || || || || | | | || || ||
Sbjct 104425 CCTCCTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCA 104484
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| |||||| || ||||| ||||||||||| ||||| |||||
Sbjct 104485 A-GGTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTG 104524
Score = 91.5 bits (100), Expect = 1e-12
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| ||||||||||| ||| || || | ||||| || | || ||
Sbjct 104762 ACGAAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGT 104821
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | || || || ||||| ||||| || || ||||| |||||||| || || || ||
Sbjct 104822 TCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCC 104881
Query 480671 TTCCTTGTCTTGAATCTT 480688
||||||||||| |||||
Sbjct 104882 CTCCTTGTCTTGGATCTT 104899
>seq59
Length=381799
Score = 96.9 bits (106), Expect = 2e-14
Identities = 242/359 (67%), Gaps = 8/359 (2%)
Strand=Plus/Plus
Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544
||||||| | ||||||||||| ||||| ||| || | || || ||| |||| || |
Sbjct 336192 GACGTCTCCGTACTGCTTGTGAGCGTGCCAAGAGAACCCTGTCCAGCGCTGCTCAGACCA 336251
Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604
| |||||| | ||||| || ||||| ||| |||| || ||| || || | |||
Sbjct 336252 CCGTTGAAATCGATTCCCTCTTTGACGGAGAAGATTTCAACGCTCAGATCACTCGTGCTC 336311
Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664
|||||||| || || | ||| | || | || || |||| ||| || |
Sbjct 336312 GTTTTGAAGACCTTAACTCCAAGGCCTTCAACGGTACTCTGGACCCTGTTGCACAGGTCC 336371
Query 475665 TCAGAGATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723
||| ||||| |||||||| | || | ||| | || ||||| || || || |||||
Sbjct 336372 TCAAGGATTCCGGCCTTGACAAGAGCA-AGGTCGACGAGATTGTGCTCGTTGGTGGTTCC 336430
Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCT-TTCATC-ATAT-TTTAATGGTAAAAAGTTA 475780
|| | || ||| || | |||| ||| ||| | || | ||| ||||||| ||| |
Sbjct 336431 ACTCGTATCCCACGGAT-ACAGAA--GCTCCTCAGCGATTTCTTTGATGGTAAGAAGCTT 336487
Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT 475839
| | || | || || ||||| || ||||| || || |||||||||||||| | |||
Sbjct 336488 GAGAAGAGCATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCTGTCCAAGCTGGTAT 336546
Score = 89.7 bits (98), Expect = 3e-12
Identities = 113/154 (73%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 474717 TTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775
|||| ||||||| | || | || || || ||||| || || || || || || ||
Sbjct 335810 TTGGGCAAGAAGGTCACCAAGGCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCAG 335869
Query 474776 CGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAAT 474835
|||||||| || |||||||| || || || ||||| || ||| | ||||| || ||
Sbjct 335870 CGTCAAGCTACCAAAGATGCTGGTGCCATCGCTGGTCTCAACGTTCTCCGTATCATCAAC 335929
Query 474836 GAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869
|| ||||| || ||||| |||||||||||||||
Sbjct 335930 GAGCCAACTGCTGCCGCTATTGCTTATGGTCTTG 335963
>seq39
Length=1363582
Score = 87.8 bits (96), Expect = 1e-11
Identities = 124/172 (72%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652
||| || || | || |||| | ||| || |||||||||||||| || || | || ||
Sbjct 689504 ATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATCAATCGCTG 689563
Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
||| || ||||||||||||||||| || || ||||| |||||| || || |||||
Sbjct 689564 TTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCGATGGTATC 689623
Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763
| | | | |||||||| ||||| || || || || ||||| |||||
Sbjct 689624 GGACGACTCCA-CCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAA 689674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268155178882880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |