Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq46 125 5e-23 seq59 96.9 2e-14 seq39 87.8 1e-11 >seq46 Length=1090308 Score = 125 bits (138), Expect = 5e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | ||||| ||| |||||| | || || |||| ||||| Sbjct 104534 ACGGAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGT 104593 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||| ||||| |||||||| || ||||| ||||| || ||||||||||| Sbjct 104594 TCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCC 104653 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| |||||||| ||||| ||||| || || | | ||||| Sbjct 104654 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAG 104713 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| || |||||||| Sbjct 104714 GGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTG 104752 Score = 102 bits (112), Expect = 5e-16 Identities = 354/548 (65%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 || ||||||||| | ||||| || ||| ||||||| ||| | | | ||| | | | Sbjct 1404 ATAGGTATTGATCTTGGAACGACCTACTCCTGTGTAGGTGTCTTTCGAGATGACAGAATC 1463 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || ||||| ||||| ||||| |||| || || || | ||| | || || || Sbjct 1464 GAAATTATCGCCAACGACCAGGGTAACCGAACGACGCCCTCGTTCGTTGCCTTCACCGAT 1523 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| || || ||||||||||| |||||| || || | | || ||| Sbjct 1524 ACGGAGCGTCTGATCGGTGATGCTGCTAAGAATCAAGTCGCCATGAACGCAGCAAACACT 1583 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || ||||| || |||||||||| || || || | || | ||||| | ||| Sbjct 1584 GTCTTCGATGCCAAGCGATTGATTGGCCGCAAGTTCAACGACCCTGAAGTCCAGGCCGAT 1643 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAA 474629 ||| || | || || ||||| | | || || || || || || | ||| Sbjct 1644 ATGAAGCACTTCCCATTCAAGGTTGTTGACAAGGGAGGAAAGCCCCTCATTGAGGTCCAA 1703 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | ||||| || || || || | || ||| | || ||||| ||||| || | | Sbjct 1704 TTCAAG--GGTGAGACCAAGCAGTTCACTCCAGAAGAGATCTCTTCCATGGTCTTGGTAA 1761 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | ||| | || || ||| | || ||||| || | | || || | || Sbjct 1762 AGATGCGTGAGACTGCTGAG-GCCTACCTTGGTGGTACCGTTAACAACGCCGTCGTCACC 1820 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || || || || || | || || || || ||||| || || || Sbjct 1821 GTCCCAGCCTACTTCAACGACTCCCAGAGACAGGCCACCAAGGATGCTGGCTTGATCGCT 1880 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || ||| | | || || || || || || || || || ||||||| ||||| Sbjct 1881 GGTTTGAACGTTCTCAGAATCATCAACGAGCCCACCGCGGCTGCTATTGCTTACGGTCTC 1940 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1941 GACAAGAA 1948 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| || | || || || || || || | || || || ||| | || Sbjct 104306 ACGGAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTC-GCTCAAAG 104364 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| ||| || || ||||| ||||| ||||| ||||| ||||| || || || || | Sbjct 104365 TTCGTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATAC 104424 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||| ||||||||||| || || || || || || | | | || || || Sbjct 104425 CCTCCTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACTTCCA 104484 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||||| || ||||| ||||||||||| ||||| ||||| Sbjct 104485 A-GGTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTG 104524 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||||||||| ||| || || | ||||| || | || || Sbjct 104762 ACGAAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGT 104821 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || || || ||||| ||||| || || ||||| |||||||| || || || || Sbjct 104822 TCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCC 104881 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||||| ||||| Sbjct 104882 CTCCTTGTCTTGGATCTT 104899 >seq59 Length=381799 Score = 96.9 bits (106), Expect = 2e-14 Identities = 242/359 (67%), Gaps = 8/359 (2%) Strand=Plus/Plus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 ||||||| | ||||||||||| ||||| ||| || | || || ||| |||| || | Sbjct 336192 GACGTCTCCGTACTGCTTGTGAGCGTGCCAAGAGAACCCTGTCCAGCGCTGCTCAGACCA 336251 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | |||||| | ||||| || ||||| ||| |||| || ||| || || | ||| Sbjct 336252 CCGTTGAAATCGATTCCCTCTTTGACGGAGAAGATTTCAACGCTCAGATCACTCGTGCTC 336311 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 |||||||| || || | ||| | || | || || |||| ||| || | Sbjct 336312 GTTTTGAAGACCTTAACTCCAAGGCCTTCAACGGTACTCTGGACCCTGTTGCACAGGTCC 336371 Query 475665 TCAGAGATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 ||| ||||| |||||||| | || | ||| | || ||||| || || || ||||| Sbjct 336372 TCAAGGATTCCGGCCTTGACAAGAGCA-AGGTCGACGAGATTGTGCTCGTTGGTGGTTCC 336430 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCT-TTCATC-ATAT-TTTAATGGTAAAAAGTTA 475780 || | || ||| || | |||| ||| ||| | || | ||| ||||||| ||| | Sbjct 336431 ACTCGTATCCCACGGAT-ACAGAA--GCTCCTCAGCGATTTCTTTGATGGTAAGAAGCTT 336487 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT 475839 | | || | || || ||||| || ||||| || || |||||||||||||| | ||| Sbjct 336488 GAGAAGAGCATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCTGTCCAAGCTGGTAT 336546 Score = 89.7 bits (98), Expect = 3e-12 Identities = 113/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 474717 TTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775 |||| ||||||| | || | || || || ||||| || || || || || || || Sbjct 335810 TTGGGCAAGAAGGTCACCAAGGCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCAG 335869 Query 474776 CGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAAT 474835 |||||||| || |||||||| || || || ||||| || ||| | ||||| || || Sbjct 335870 CGTCAAGCTACCAAAGATGCTGGTGCCATCGCTGGTCTCAACGTTCTCCGTATCATCAAC 335929 Query 474836 GAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 || ||||| || ||||| ||||||||||||||| Sbjct 335930 GAGCCAACTGCTGCCGCTATTGCTTATGGTCTTG 335963 >seq39 Length=1363582 Score = 87.8 bits (96), Expect = 1e-11 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| || || | || |||| | ||| || |||||||||||||| || || | || || Sbjct 689504 ATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATCAATCGCTG 689563 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||| || ||||||||||||||||| || || ||||| |||||| || || ||||| Sbjct 689564 TTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCGATGGTATC 689623 Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | | | |||||||| ||||| || || || || ||||| ||||| Sbjct 689624 GGACGACTCCA-CCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAA 689674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268155178882880