Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 seq74 100 3e-16 >seq9 Length=1359104 Score = 127 bits (140), Expect = 2e-24 Identities = 190/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 || ||||| |||||||||| || ||||||||| | ||| || ||||| || || | | Sbjct 232485 CCGTGATAAATTGCATAGAATGCACTCATATTTGCCAACAGCGCCTGTGCCGTACATACG 232426 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 || ||||| || || || | || ||||||||||||||| || |||| ||||| || | Sbjct 232425 TTGCTGGTAGCCTTCTCCCGTCGAATATGCTGCTCTCTGGTCTGTAATGCTAGCCTATTC 232366 Query 139392 GCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTA 139451 || | || ||||| || ||| | ||| | || || |||||||||||| Sbjct 232365 GCTCTGTCTCCAAGCCTGTCTTTCGAAACACCAATAATACGTCCTGGAATCTTTCTCTTA 232306 Query 139452 TACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCA 139511 || || || | | |||||| ||||| |||||||| ||||| || || | ||| | ||| Sbjct 232305 TATTTTTCAGCAGCTGCAAAAAATGCCGCATGAGGTCCTCCATAACCAAAAGGTACGCCA 232246 Query 139512 AACCTTTGCATACTACCTACAGCAATATCA 139541 || | ||| |||| | ||||||||| Sbjct 232245 AATCGCTGCGAGTTACCGAACGCAATATCA 232216 >seq74 Length=81004 Score = 100 bits (110), Expect = 3e-16 Identities = 184/270 (68%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 ||||| ||| | ||||| ||| || ||||||||| || |||||||| || || |||| Sbjct 23127 CCATGGTATACCGCATAAAATGCACTCATATTTGCCAGAAGTGCTTGCGCCGTACAGACA 23068 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 || |||||||| || ||||| | ||| ||||| || | || || | || | || | | Sbjct 23067 TTGCTGGTTGCCTTCTCTCTACGAATGTGCTGTTCGCGCGTCTGCAAAGCCAGTCGGAGT 23008 Query 139392 GCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTA 139451 || | ||| || |||||| || || | | || || || ||||||| | || Sbjct 23007 GCGGTATTCCCCAGTCTGTCCTTCGAGACGCCAATCAACCTTCCGGGCATCTTTCGCATA 22948 Query 139452 TACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCA 139511 ||||| | || ||||||||||||||||| || || || || || | || | ||| Sbjct 22947 TACTTCTGGCTTACAGCAAAGAATGCAGCATGGGGGCCACCATAGCCAAATGGTACACCG 22888 Query 139512 AACCTTTGCATACTACCTACAGCAATATCA 139541 || | ||| | | || | || |||||| Sbjct 22887 AAGCGCTGCGCATTTCCGAAGGCGATATCA 22858 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||||||||| || || | ||||| || || || ||||| || ||||| | | Sbjct 22513 CATTGCCTCTGCTGCGGCTGTAGGCTCATCCAAAAGCGACGCGTTCGCAATTGGAAGGGC 22454 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || || | | ||| || ||||| || || | | ||| | | |||||| || Sbjct 22453 TGTGAGATCGGATACGAGGGTCTGGTAGTTTAACAGTGATTCGAGCCGTCCCTGGCTGAT 22394 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||| | || || || |||||| ||| ||||| ||||||||||| | ||| || | Sbjct 22393 CTCTGGCTGGTACGGCGTGTAACTTGTATACCATGCTGGATTCTCAAGGATGTTACGTTT 22334 Query 140039 TATGACTGGGGGTGTAATG-GTTCCATAGTATCC 140071 || || ||| | ||| |||||| |||||| Sbjct 22333 GATAACCTCGGG-GACATGCGTTCCAGCGTATCC 22301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994347011200