Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq73 257 2e-63 seq16 102 1e-16 seq1 86.0 7e-12 >seq73 Length=484926 Score = 257 bits (284), Expect = 2e-63 Identities = 1131/1755 (64%), Gaps = 45/1755 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 |||||| ||||| ||||||| || || | || ||||| || ||||| ||||| || | Sbjct 50572 CCCACAACACATGATCATGCGTGTGGCTGTTGGTATCCATGGCGAAGATATTGAATCCGC 50631 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||||||| || |||||| | | ||| |||| || || | || || |||| Sbjct 50632 AATCGAGACATACAACTTGATGTCGAACAAGTAC-TTCACACATGCTTCTCCTACACTCT 50690 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 ||| |||||| || || | |||||||| |||||||| | | | ||||| | Sbjct 50691 TCAGTGCTGGAACCCCTCAGGCTCAGATGTCATCATGCTTCCTCGTAGATATGAAGGAAG 50750 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || || | |||||||||| || || | | ||||| || || ||| || | Sbjct 50751 ACAGCATTGATGGTATCTATGATACCCTGAAGACATGTGCTATGATTTCGAAGAATGCCG 50810 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | || ||||| | | ||||| | |||| | | || ||| || || | Sbjct 50811 GTGGCATTGGTCTCAATATCCACAGAATCCGAGCTACTGGCTCCTACATTTCCGGCACCA 50870 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| || |||||||| | |||||||| || || || ||| |||||| | |||| Sbjct 50871 ACGGTTTCTCGAATGGTATTGTGCCAATGCTGCGTGTTTTCAACAACACAGCCAGATATG 50930 Query 75570 TAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCATGGC 75623 | |||||| || | |||| | || || | || ||||| | || ||||||| Sbjct 50931 TTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTTGCTATCTACCTTGAGCCATGGC 50987 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 | || ||| || | |||||||| || | || || || ||| | || || | ||| | Sbjct 50988 ACGCTGATGTCTTCGAGTTCCTCGATCTCAGAAAGAATCATGGTAAGGAGGAAGTTCG-T 51046 Query 75684 GTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | | | |||||||| | || |||||||||| || || ||||||||| |||||||| | Sbjct 51047 GCACGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTGAGAAA 51106 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 || | ||| | || | |||||| | || || ||||| | || | || Sbjct 51107 AACGGAGAGTGGACCCTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATGTCTACGGA 51166 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA-GAGCCAATGCGACTGT 75861 || ||||||||||| | ||| |||||||| ||||| | | ||| | ||| || Sbjct 51167 GATGAGTTTGAAGCTTTGTACGAGAAGTATGAGCGCGAGGGCAAGGGCCGAAA-GACCGT 51225 Query 75862 ACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | || | | | | | ||| | | || || || |||| || |||||||||| |||| Sbjct 51226 AA-AGGCTCAAAAGCTCTGGTATTCCATCCTTGAAGCACAAACCGAGACTGGAAACCCAT 51284 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 ||||| ||||||||||| || ||| ||||| ||||| ||||| ||||||| ||| Sbjct 51285 TCATGCTCTACAAGGATGCGTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACTATCC 51344 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 ||||| || | ||||| || ||| | || ||| || | ||||||| ||||| | Sbjct 51345 GTAGCTCCAACTTGTGCACAGAGATTGTCGAATACTCATCTGCGGATGAGGTTGCTGTCT 51404 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 |||| ||||| || || || ||||| | | ||| || | | | | |||| ||| | Sbjct 51405 GCAACTTGGCCTCTATTGCACTTCCCACCTTTGTGGATATGAACAATGGGACTTATGACT 51464 Query 76101 ATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGAC 76159 | || ||||| ||| || | ||| |||||||||| || | ||| |||| || Sbjct 51465 TCCAGAAGCTTCACGAAGTCGTCCAAG-TTGTTACCAAGAACTTGAACAAGATCATCGAT 51523 Query 76160 AGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGG 76218 || | || ||||| ||| || | ||| || | || || | || |||| Sbjct 51524 GTTAACTACTACCCCGTCCCAGA-GGCAAGGAAGAGCAACTTCCGTCATCGTCCCATTGC 51582 Query 76219 TTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTGCCGCTACGCATTTGATTCA 76276 | ||||| || || | ||||||| ||| || | ||| | | | ||||| ||| Sbjct 51583 AGTTGGTGTACAGGGATTGGCGGATG-CTTTCTTGGCTCTGCGTGTTC-CTTTTGACTCA 51640 Query 76277 GATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAG 76336 ||| || ||| | | ||| || ||||| || || || || |||| | || Sbjct 51641 CCTGAGGCAAAGCATCTCAATATTCAAATCTTCGAGACTATCTACCACGGTGCTCTTACT 51700 Query 76337 GC--GAGTTGTGAATTGGCTGAAGCCCAA-GGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 || || | | ||| | ||| || || | |||||||||| ||| || || || Sbjct 51701 GCTTCCGTAGAG-CTTGCC--AAGATTAATGGCCCGTATGAGACATATGAAGGATCCCCT 51757 Query 76394 GCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC--AAGCTCAACTACG 76451 ||||| |||| | |||||| | ||||||||||| | || | || || || || | Sbjct 51758 GCGTCGAAAGGAGAGCTTCAATATGATATGTGGGGA-GTCACTCCTACAGATC-TCTGGG 51815 Query 76452 ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 76511 | |||||| | ||| | | |||||| | | || | || ||||||||| || | | Sbjct 51816 ATTGGGATAGCTTGAAGCAGCAGATCAAGCAACATGGCATCCGCAACAGTCTTCTGGTTG 51875 Query 76512 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCAT 76571 | || |||||||| ||| ||| || ||| | ||| || || |||||||| |||| Sbjct 51876 CTCCTATGCCAACTGCCAGCACTAGCCAGATCCTTGGTTTCAACGAGTGCTTTGAGCCAT 51935 Query 76572 ACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGC 76631 |||| | ||||| ||| | | || ||||| ||||| | || ||| Sbjct 51936 ACACCTCCAACATTTACTCCCGCCGTGTGCTTGCAGGAGAGTTCCAGGTGGTGAACCCTT 51995 Query 76632 ACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 76691 || |||| || || | || || |||||||| | | |||||| | | ||| Sbjct 51996 GGCTTCTCAAGGATCTTGTCGATATGGGACTCTGGTCTGACAACATGAAGAACCGCATTA 52055 Query 76692 TGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCT 76751 | | ||||||||||| || ||||| | | |||||| ||||| ||| ||||| Sbjct 52056 TCGCTGATGGTGGTTCCATCCAGAATATTCCCAACATCCCATCAGATATTAAGGCTCTCT 52115 Query 76752 ACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTG---ACATGGCCGCAGATCGTG 76808 || || || ||||| || | | | | ||||| | ||||| || || |||| Sbjct 52116 ACAAGACCGTCTGGGAGAT--TTCTCAGCG-TAACATTGTGCAGATGGCTGCTGACCGTG 52172 Query 76809 GTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTC 76866 || |||||||||| |||| ||| ||||| | |||| | || || ||| Sbjct 52173 GTGCTTTCATTGATC--AGTCCCAGTCAATGAACATTCACATGAAGGACCCCACCATGGG 52230 Query 76867 CAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 |||| || | |||||| | | ||||| | || | || ||||| ||||| || Sbjct 52231 CAAGATCACAAGCATGCATTTCACTGGCTGGAAGCTTGGCTTGAAGACCGGCATGTATTA 52290 Query 76927 TCTCCGATCAAAGGC 76941 |||||| ||| ||| Sbjct 52291 TCTCCGCACAATGGC 52305 >seq16 Length=379189 Score = 102 bits (112), Expect = 1e-16 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 ||||||||||||||| ||||| || | | | || || ||||| || ||||| || Sbjct 192487 TGGTGCCAAGATCCCTCGAGGAGCTATCTTGTCTGGACCTCCTGGTACTGGTAAGACTCT 192546 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CA 175392 ||| ||| || | ||| ||||| || | ||||| ||| || || | || || | | Sbjct 192547 CCTAGCCAAGGCTACCGCTGGTGAGTCGCAGGTCCCCTTCTTC-AGCG-TCAGCGGTTCC 192604 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 | || ||||| ||||| || ||||| |||||| || || || |||||||| | | | Sbjct 192605 GAGTTCGTGGAAATGTTCGTCGGTGTTGGTGCCTCCAGAGTGCGGGATCTCTTCGCTACC 192664 Query 175453 GCCCGCGAAAATCA-ACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 || | || | || |||||| ||| ||||||| |||||||||||||| Sbjct 192665 GCAAGA-AAGAGCACACCATGCATTATCTTCATCGATGAGATTGATGC 192711 >seq1 Length=824168 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 27781 CCAGTAGATCCAAATCCACCCGCACCTCTCTCTGTCTCTTCAAGAACACCAATTTCCTGC 27840 || ||| ||||||||||||||||||||| | ||||| || | | | | || || Sbjct 648217 CCGGTACTTCCAAATCCACCCGCACCTCTAACAGTCTCATCCAATTCCTCCACCTCTTGG 648276 Query 27841 ACATCGGGTGTTTCACAGCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACC 27900 || || || || | | ||| | ||| | |||||| || ||||| |||| || | | Sbjct 648277 ACTTCCGGGGTATAGATCCTCTCCAAGACCAATTGTGCAATACGATCGCCTTCTTTGATC 648336 Query 27901 TCAAAGTCTTTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGA 27960 ||| ||||| ||||| ||||||||||| | ||| || || ||| ||| || | Sbjct 648337 TCATAGTCTACCTCTCCATGATTGAAGAGCAAGACCTTTACAGGTCCTCGATAATCAGCG 648396 Query 27961 TCAATAACACCCGCACCAACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCA 28020 ||||| ||||| ||||| ||| ||||| |||||||| || || || || Sbjct 648397 TCAATCACACCAGCACCCGTAGAAATTGAGTGCTTAGAGGCGAGACCAGAGCGGGGAGCG 648456 Query 28021 ACACGACCAT 28030 | ||| |||| Sbjct 648457 ATACGTCCAT 648466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565424012800