Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq10 105 2e-17
seq102 95.1 4e-14
seq122 91.5 4e-13
>seq10
Length=210998
Score = 105 bits (116), Expect = 2e-17
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
||||| || || | | ||| || || || ||| | ||||| || | ||| | | |
Sbjct 62425 ATAAGCCCGCAAATGTCACAAACGTGAACTCTGAAGGCATCTGAAACCTCAAACAATCTC 62366
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 62365 TCCTTCAAGAAAGCAGCTGCACCGTGTGAAATCATACAATCACGTTCCATCTCACCGAAA 62306
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574
|| ||||||||||| | || | |||||| |||| || | ||||||
Sbjct 62305 CGCAGACCACCATCTCTTGCACGACCCTCCACAGGTTGTCTCGTGAGA 62258
>seq102
Length=335414
Score = 95.1 bits (104), Expect = 4e-14
Identities = 172/252 (68%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| |||||| | ||||| || ||||| || ||||||||||| || || ||
Sbjct 10892 CATAACGTCTTCAAGGGCCTTGACCAACCGACGTTGGATATAACCAGTCTCAGCAGTCTT 10833
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| |||||||| ||||| | | |||| ||||||| || ||||| | ||| ||
Sbjct 10832 GACAGCCGTATCAATAAGACCTTCTCTACCAGCCATAGCGTGAAAGAAGAACTCCGTGGG 10773
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
|| || | | | ||||| |||| || || || | | || || |||| ||||
Sbjct 10772 AGTAAGGCCACGTAGATAGGAGTTCTCCACAAAGCCTCTGGATTCTGGAGAATAGTCGTC 10713
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||||| || || ||||| || | || | |||| | || || ||||| || |||||
Sbjct 10712 TTTGGTGAAATGGGGCAGTGTTCGGTATTTGAAGCCAAAAGGAATTCGCTTACCCTCAAC 10653
Query 302805 GTTCTGCTGTCC 302816
| ||| || ||
Sbjct 10652 GGACTGTTGACC 10641
Score = 91.5 bits (100), Expect = 4e-13
Identities = 105/141 (74%), Gaps = 3/141 (2%)
Strand=Plus/Minus
Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871
||||||||| | | ||| || |||||| | || ||||| |||||| | ||||||||
Sbjct 11666 CAGAATTTCCTTGAGACGAGGGACACCAAGAGTGACGTT---CTTGGAAGAGACACCAGC 11610
Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
|||||||||||| || || || | || |||| ||| || || ||| || || ||||
Sbjct 11609 AAAGTGGAAAGTGTTGAGCGTCATCTGGGTAGCTGGTTCTCCGATAGACTGCGCAGCAAG 11550
Query 301932 CATACCAACCATTTCTCCTGG 301952
| ||||||||| ||||| ||
Sbjct 11549 TACACCAACCATCTCTCCAGG 11529
>seq122
Length=209688
Score = 91.5 bits (100), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075
|| ||| |||| || || || ||||| | |||||| || ||||||||||||| || |
Sbjct 46295 GCAAGACCACCGAGGGAATCTCGGTCCAAGAAATTGGTCGGTTCGTCAAGGACGAGCAAA 46236
Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAGT 354135
|| || | ||||||| ||| | || || || |||||||||||||| || ||||||||
Sbjct 46235 TGAGGATTGTTCCACATGGCTCCTGCTAGGACAACCTTAACCTTCTGACCTCCTGATAGA 46176
Query 354136 GCGTGAATCT 354145
|| |||||
Sbjct 46175 CCGCCAATCT 46166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471807039708720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |