Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 105 2e-17 seq102 95.1 4e-14 seq122 91.5 4e-13 >seq10 Length=210998 Score = 105 bits (116), Expect = 2e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||| || || | | ||| || || || ||| | ||||| || | ||| | | | Sbjct 62425 ATAAGCCCGCAAATGTCACAAACGTGAACTCTGAAGGCATCTGAAACCTCAAACAATCTC 62366 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 62365 TCCTTCAAGAAAGCAGCTGCACCGTGTGAAATCATACAATCACGTTCCATCTCACCGAAA 62306 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 || ||||||||||| | || | |||||| |||| || | |||||| Sbjct 62305 CGCAGACCACCATCTCTTGCACGACCCTCCACAGGTTGTCTCGTGAGA 62258 >seq102 Length=335414 Score = 95.1 bits (104), Expect = 4e-14 Identities = 172/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| |||||| | ||||| || ||||| || ||||||||||| || || || Sbjct 10892 CATAACGTCTTCAAGGGCCTTGACCAACCGACGTTGGATATAACCAGTCTCAGCAGTCTT 10833 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | |||| ||||||| || ||||| | ||| || Sbjct 10832 GACAGCCGTATCAATAAGACCTTCTCTACCAGCCATAGCGTGAAAGAAGAACTCCGTGGG 10773 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || || | | | ||||| |||| || || || | | || || |||| |||| Sbjct 10772 AGTAAGGCCACGTAGATAGGAGTTCTCCACAAAGCCTCTGGATTCTGGAGAATAGTCGTC 10713 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||||| || || ||||| || | || | |||| | || || ||||| || ||||| Sbjct 10712 TTTGGTGAAATGGGGCAGTGTTCGGTATTTGAAGCCAAAAGGAATTCGCTTACCCTCAAC 10653 Query 302805 GTTCTGCTGTCC 302816 | ||| || || Sbjct 10652 GGACTGTTGACC 10641 Score = 91.5 bits (100), Expect = 4e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 ||||||||| | | ||| || |||||| | || ||||| |||||| | |||||||| Sbjct 11666 CAGAATTTCCTTGAGACGAGGGACACCAAGAGTGACGTT---CTTGGAAGAGACACCAGC 11610 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 |||||||||||| || || || | || |||| ||| || || ||| || || |||| Sbjct 11609 AAAGTGGAAAGTGTTGAGCGTCATCTGGGTAGCTGGTTCTCCGATAGACTGCGCAGCAAG 11550 Query 301932 CATACCAACCATTTCTCCTGG 301952 | ||||||||| ||||| || Sbjct 11549 TACACCAACCATCTCTCCAGG 11529 >seq122 Length=209688 Score = 91.5 bits (100), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 || ||| |||| || || || ||||| | |||||| || ||||||||||||| || | Sbjct 46295 GCAAGACCACCGAGGGAATCTCGGTCCAAGAAATTGGTCGGTTCGTCAAGGACGAGCAAA 46236 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAGT 354135 || || | ||||||| ||| | || || || |||||||||||||| || |||||||| Sbjct 46235 TGAGGATTGTTCCACATGGCTCCTGCTAGGACAACCTTAACCTTCTGACCTCCTGATAGA 46176 Query 354136 GCGTGAATCT 354145 || ||||| Sbjct 46175 CCGCCAATCT 46166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807039708720