Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq73 123 2e-23
seq22 109 5e-19
seq46 93.3 4e-14
>seq73
Length=484926
Score = 123 bits (136), Expect = 2e-23
Identities = 417/638 (65%), Gaps = 21/638 (3%)
Strand=Plus/Minus
Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356
|||||||| ||||| ||||| | | || || || |||||| | || | ||| |
Sbjct 51204 TCGCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCA 51145
Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416
|||||| | |||||||| || | ||| | ||||| || || | | |||||||
Sbjct 51144 GGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAG 51085
Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476
||||| ||||||||||| || | | | |||||| || || ||| | |||||
Sbjct 51084 AGATCGGGAATCCACAAGGCATAGAAGAGATCGCGTGCACGAACTTCCTCCTTA-CCATG 51026
Query 139477 TTACGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGC 139535
| | || | | | ||||| || || || |||||||||||||| || || ||||| ||
Sbjct 51025 ATTCTTTCTGAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGC 50966
Query 139536 CATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATAC 139592
| || || || ||| ||||||||||| || | || | | || ||||| ||
Sbjct 50965 AAAGGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAAC 50906
Query 139593 GCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGA----TGGGA--CT 139646
|||| ||| ||| | | ||| ||| |||||||||| |||| | ||| |
Sbjct 50905 ACGCAGCATTGGCACAATACCATTCGAGAAACCGTTGGTGC--CGGAAATGTAGGAGCCA 50848
Query 139647 GTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAA 139706
|| |||||||| || | ||||| || || || ||| || || || || |
Sbjct 50847 GT----AGCTCGGATTCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCAT 50792
Query 139707 AACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCA 139765
| | | || | | | || || || ||||| |||||||| |||| ||| || |
Sbjct 50791 AGCAC-ATGTCTTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGA 50733
Query 139766 GAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGT 139825
| |||||||| || | || | | || || || || || |||||| || |
Sbjct 50732 GGAAGCATGATGACATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCAT 50673
Query 139826 GCGTGAA-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTT 139884
| ||||| | ||| ||||||||||| | ||| || ||||| ||| |||||||
Sbjct 50672 GTGTGAAGTACTTG-TTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCG 50614
Query 139885 CCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922
|| |||||||| |||| || ||||| | ||| |||||
Sbjct 50613 CCATGGATACCAACAGCCACACGCATGATCATGTGTTG 50576
>seq22
Length=1308897
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || ||||| || || || || || | ||
Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || ||||| ||||| || |||
Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||||||||| || ||||| |||||| | | | | || || || |||
Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345
Query 24884 ATTCAAAAGGAATCGACACTACA 24906
|| || ||||| || || || ||
Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCA 1149368
>seq46
Length=1090308
Score = 93.3 bits (102), Expect = 4e-14
Identities = 134/185 (72%), Gaps = 3/185 (2%)
Strand=Plus/Minus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACA 24786
||||| || || || || || || || || || ||||||| | || |||| ||| |
Sbjct 104959 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTTAAGAGC 104900
Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846
|| |||||||||||| || || || || || |||||||| ||| | ||||| || || ||
Sbjct 104899 AA-GATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGCAA 104841
Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906
||||| ||||| ||| | | || || |||||||| || ||||| || || || ||
Sbjct 104840 GCAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTTCA 104781
Query 24907 -CTTG 24910
||||
Sbjct 104780 TCTTG 104776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894450716800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |