Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq73 123 2e-23 seq22 109 5e-19 seq46 93.3 4e-14 >seq73 Length=484926 Score = 123 bits (136), Expect = 2e-23 Identities = 417/638 (65%), Gaps = 21/638 (3%) Strand=Plus/Minus Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 |||||||| ||||| ||||| | | || || || |||||| | || | ||| | Sbjct 51204 TCGCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCA 51145 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 |||||| | |||||||| || | ||| | ||||| || || | | ||||||| Sbjct 51144 GGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAG 51085 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 ||||| ||||||||||| || | | | |||||| || || ||| | ||||| Sbjct 51084 AGATCGGGAATCCACAAGGCATAGAAGAGATCGCGTGCACGAACTTCCTCCTTA-CCATG 51026 Query 139477 TTACGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGC 139535 | | || | | | ||||| || || || |||||||||||||| || || ||||| || Sbjct 51025 ATTCTTTCTGAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGC 50966 Query 139536 CATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATAC 139592 | || || || ||| ||||||||||| || | || | | || ||||| || Sbjct 50965 AAAGGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAAC 50906 Query 139593 GCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGA----TGGGA--CT 139646 |||| ||| ||| | | ||| ||| |||||||||| |||| | ||| | Sbjct 50905 ACGCAGCATTGGCACAATACCATTCGAGAAACCGTTGGTGC--CGGAAATGTAGGAGCCA 50848 Query 139647 GTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAA 139706 || |||||||| || | ||||| || || || ||| || || || || | Sbjct 50847 GT----AGCTCGGATTCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCAT 50792 Query 139707 AACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCA 139765 | | | || | | | || || || ||||| |||||||| |||| ||| || | Sbjct 50791 AGCAC-ATGTCTTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGA 50733 Query 139766 GAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGT 139825 | |||||||| || | || | | || || || || || |||||| || | Sbjct 50732 GGAAGCATGATGACATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCAT 50673 Query 139826 GCGTGAA-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTT 139884 | ||||| | ||| ||||||||||| | ||| || ||||| ||| ||||||| Sbjct 50672 GTGTGAAGTACTTG-TTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCG 50614 Query 139885 CCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 || |||||||| |||| || ||||| | ||| ||||| Sbjct 50613 CCATGGATACCAACAGCCACACGCATGATCATGTGTTG 50576 >seq22 Length=1308897 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | || Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| ||||| || ||| Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| || ||||| |||||| | | | | || || || ||| Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCA 1149368 >seq46 Length=1090308 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/185 (72%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACA 24786 ||||| || || || || || || || || || ||||||| | || |||| ||| | Sbjct 104959 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTTAAGAGC 104900 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 || |||||||||||| || || || || || |||||||| ||| | ||||| || || || Sbjct 104899 AA-GATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGCAA 104841 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| ||| | | || || |||||||| || ||||| || || || || Sbjct 104840 GCAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTTCA 104781 Query 24907 -CTTG 24910 |||| Sbjct 104780 TCTTG 104776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894450716800