Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq46 156 3e-32
seq59 96.9 3e-14
>seq46
Length=1090308
Score = 156 bits (172), Expect = 3e-32
Identities = 922/1457 (63%), Gaps = 19/1457 (1%)
Strand=Plus/Minus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
|| ||||||||||| | ||| || || || ||||| || || || || | |||| |||
Sbjct 2842 ATTCCATTGGCATCAAGATCGAAGGTAACCTCAATCTGTGGAACACCACGTGGAGCGGGT 2783
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
||||| || | | || | || || || || || || ||| ||||||
Sbjct 2782 GGGATACCGGTAAGCTCGAACTTGCCGAGCAAGTTGTTGTCCTTGGTGCGAGCACGTTCA 2723
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620
|||||||| | |||||| || ||| || || || || | || | || ||| |
Sbjct 2722 CCCTCGAAGACTTGGATGAGCACACCAGGCTGGTTGTCGGAGAAGGTGGAGAAGACTTCG 2663
Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680
|| || || || || || ||||||| ||| | |||||||| ||||||||
Sbjct 2662 GACTTCTTGGTTGGGATAGTAGTGTTTCGGGGAATGAGCTTGGTCATCTGGCCACCAGCA 2603
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738
|| || | ||| ||||| | || | ||||| | || | || | || | | ||
Sbjct 2602 GTCTCGATACCGAGAGACAATGGGGCAACATCGAGGAGCAAGATCTCGTTGGTGGACTTG 2543
Query 281739 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797
| | | | | |||| || ||||| || || | ||||||||| || |||||||| ||
Sbjct 2542 GAGCTGGTATCACCAGAGAGGATAGCAGCCTGGACAGCAGCACCGTAGGCAACAGCCTCG 2483
Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857
|| || || | || | || | | || || ||||| |||| | | || | |||
Sbjct 2482 TCGGGGTTGATAGACTTGTTGGGCTCCTTGCCGTTGAAGAAATCGGTGATGAGCT-TCTG 2424
Query 281858 ACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC-CTGTGATTTAT 281915
| | || ||||| | || || || || | ||||| || || || ||| || || |
Sbjct 2423 GATTCTTGGGATACGGGTAGAGCCACCGACGAGGACAATCTCGTGGACGCTG-GACTTGT 2365
Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975
| | || | ||| || || || || || || ||| | ||| || | |||
Sbjct 2364 CGATCTTAGCATCTTGCAAGACACGCTCGACTGGCTCGAGAGTGGATCTGAAGAGGTCCT 2305
Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAA 282033
|||||||| |||||| | || | || || || | || || |||| || || |
Sbjct 2304 GGCAAAGTTCCTCGAATCTGGCACGGGT--GATGGAAGTGTAGAAGTCAACACCCTCATA 2247
Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093
| || || | || || | || |||| | |||||| || | ||| || ||||| ||
Sbjct 2246 GAGGGAGTCGATCTCGATGGAGGTCTGAGCAGCAGAAGAGAGAGTACGCTTGGCACGCTC 2187
Query 282094 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA-ATCTGTTTTATATT 282152
|| || || | || | || | || ||| | | || | ||| | || || |
Sbjct 2186 GCAAGCAGTTCGGAGACGACGGAGAGCACGTGC-GCTAGAGGAGATATCCTTCTTGTACT 2128
Query 282153 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 282212
| | |||||| || | || | | || ||||| || || || || ||||||||||
Sbjct 2127 TGCGCTTGAACTCGTTGACGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCTCCCA 2068
Query 282213 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 282272
| | |||| || | || | | |||| ||| | || ||||| | | | || |
Sbjct 2067 AGTGGGTATCACCAGCAGTGGACTTGACTTCGAAGATACCTTCTTCGATGGTAAGGAGGG 2008
Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 282332
|||||| ||||||||||| | ||| || || || || || || || |
Sbjct 2007 AAACATCGAAAGTTCCACCACCAAGATCGAAGATGAGGACGTTTCGCTCACCCTCAACCT 1948
Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392
| || || ||||| || |||| |||||| || || || || || || ||||| | ||| |
Sbjct 1947 TCTTGTCGAGACCGTAAGCAATAGCAGCCGCGGTGGGCTCGTTGATGATTCTGAGAACGT 1888
Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452
| | |||||| || || ||||| || ||||| ||||| || || ||||| || || |
Sbjct 1887 TCAAACCAGCGATCAAGCCAGCATCCTTGGTGGCCTGTCTCTGGGAGTCGTTGAAGTAGG 1828
Query 282453 CAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511
| || || || | ||||| | |||| || |||| || || || || |
Sbjct 1827 CTGGGACGGTGACGACGGCGT-TGTTAACGGTACCACCAAGGTAGGCCTCAGCAGTCTCA 1769
Query 282512 TTCAT-TTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA-T 282569
||| ||||| || | ||| || || || | |||||||| | ||||||| |||
Sbjct 1768 CGCATCTTTAC-CAAGACCATGGAAGAGATCTCTTCTGGAGTGAACTGCTTGGTCTCACC 1710
Query 282570 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAAT 282629
|||| || || |||| || || || | || ||| || ||||| | |
Sbjct 1709 CTTGA-ATTGGACCTCAATGAGGGGCTTTCCTCCCTTGTCAACAACCTTGAATGGGAAGT 1651
Query 282630 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 282689
|||||||| | || || |||| || || | | ||||| ||||| || ||||
Sbjct 1650 GCTTCATATCGGCCTGGACTTCAGGGTCGTTGAACTTGCGGCCAATCAATCGCTTGGCAT 1591
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
| || | ||| || | || || | || |||||| || || ||||| || ||||||
Sbjct 1590 CGAAGACAGTGTTTGCTGCGTTCATGGCGACTTGATTCTTAGCAGCATCACCGATCAGAC 1531
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
| || || || || || | ||| | || || || || || ||||| || || || || |
Sbjct 1530 GCTCCGTATCGGTGAAGGCAACGAACGAGGGCGTCGTTCGGTTACCCTGGTCGTTGGCGA 1471
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
||||||| | | | ||| | | | ||||||||||| | || ||||| | |||||
Sbjct 1470 TAATTTCGATTCTGTCATCTCGAAAGACACCTACACAGGAGTAGGTCGTTCCAAGATCAA 1411
Query 282870 TACCAATAGCAATTTTA 282886
|||| |||| || |||
Sbjct 1410 TACCTATAGAGATGTTA 1394
>seq59
Length=381799
Score = 96.9 bits (106), Expect = 3e-14
Identities = 206/305 (68%), Gaps = 6/305 (2%)
Strand=Plus/Minus
Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251
|||| ||||| | ||||||||| | || | || | ||||| | || ||| | |
Sbjct 336113 TATCGAAATCCTGACCTCCCAAGTGGGTGTCACCGGCGGTAGCCTTAACAGTGAAGACGC 336054
Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311
|| | | | ||| |||| |||||| |||||||| || | ||| | || || |
Sbjct 336053 CACCCTGGATGTTCAAGAGAGAAACATCGAAAGTTCCACCGCCGAGATCGTAGATGAGAA 335994
Query 282312 CATTCATTTCTTTGTCTTGGTTTTT----ATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|||| || ||| || | |||| | |||||||||| |||| ||| |||||||||
Sbjct 335993 CATTTCGCTCCTTG-CTGGATTTTCCGGCACCAAGACCATAAGCAATAGCGGCAGCAGTT 335935
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
|| || || || || | | ||| || |||||||| || || |||||||| || |||
Sbjct 335934 GGCTCGTTGATGATACGGAGAACGTTGAGACCAGCGATGGCACCAGCATCTTTGGTAGCT 335875
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTTT 282486
|| | || ||||| || || ||||| ||||| || || || | || | ||||||
Sbjct 335874 TGACGCTGGTTGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCCTTGGTGACCTTCTTG 335815
Query 282487 TCCAA 282491
||||
Sbjct 335814 CCCAA 335810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740602906366560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |