Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq46 138 2e-27
seq39 98.7 2e-15
>seq46
Length=1090308
Score = 138 bits (152), Expect = 2e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || ||||| |||||||||||||| || || || || ||||
Sbjct 104527 TACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAG 104586
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| ||| || || || || || || ||||||||||| || | ||||| || ||||
Sbjct 104587 AGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAG 104646
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||| ||||| || |||||||| | || || || ||||| || || | ||| |
Sbjct 104647 GAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGA 104706
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || |||||||| || | ||||| ||||| || |||||
Sbjct 104707 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
Score = 89.7 bits (98), Expect = 1e-12
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| ||||| ||||| || || || || || || ||
Sbjct 104299 TACCACCACGGAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGC 104358
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | ||| || || || || || || ||||| || || || | ||||| || || |
Sbjct 104359 TCAAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTG 104418
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||||||||||||||| | || || || || || || || | || |
Sbjct 104419 GGATACCCTCCTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAA 104478
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||| || || ||||| || || | ||||| || || || |||||
Sbjct 104479 CTTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
>seq39
Length=1363582
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
||||| ||||| || || || || ||| || || || ||||| |||||||| |||||
Sbjct 689496 TTCTGGATATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATC 689555
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742
| || ||||| || ||||| |||||||||||||| || ||||| | || ||||| ||
Sbjct 689556 AATCGCTGTTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCG 689615
Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
|| ||||| | || || || | || || ||||| || || | ||||| || ||
Sbjct 689616 ATGGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAA 689674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981820155389840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |