Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq46 138 2e-27 seq39 98.7 2e-15 >seq46 Length=1090308 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||||||||| || || || || |||| Sbjct 104527 TACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAG 104586 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| || || || || || || ||||||||||| || | ||||| || |||| Sbjct 104587 AGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAG 104646 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || |||||||| | || || || ||||| || || | ||| | Sbjct 104647 GAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGA 104706 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| ||||| || ||||| Sbjct 104707 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||| || || || || || || || Sbjct 104299 TACCACCACGGAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGC 104358 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| || || || || || || ||||| || || || | ||||| || || | Sbjct 104359 TCAAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTG 104418 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||||||||| | || || || || || || || | || | Sbjct 104419 GGATACCCTCCTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAA 104478 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || | ||||| || || || ||||| Sbjct 104479 CTTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527 >seq39 Length=1363582 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| ||||| || || || || ||| || || || ||||| |||||||| ||||| Sbjct 689496 TTCTGGATATTGTAGTCTGACAGGGTTCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATC 689555 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | || ||||| || ||||| |||||||||||||| || ||||| | || ||||| || Sbjct 689556 AATCGCTGTTGGTCCGGAGGAATTCCTTCCTTATCCTGGATCTTCGACTTGACATTGTCG 689615 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || ||||| | || || || | || || ||||| || || | ||||| || || Sbjct 689616 ATGGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAA 689674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820155389840