Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq46 118 1e-21 seq22 113 4e-20 seq24 89.7 5e-13 >seq46 Length=1090308 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 || ||||| || ||||| |||| || || ||| | ||||||||||||||||| ||| | Sbjct 104109 TCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCA-TCCTCGAGCTGCTTGCCAGCGAA 104167 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 |||||| ||||| ||||| || ||||| || |||||||| |||||| ||||| | Sbjct 104168 AATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGACTTGACGTT 104227 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| || || | || ||||| || | |||| || || || |||| || || || Sbjct 104228 GTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCAC 104287 Query 133649 GAAAATCTGCAT 133660 |||||||||||| Sbjct 104288 GAAAATCTGCAT 104299 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| || || || ||||| |||| || || | | | ||||||||||||||||| ||| Sbjct 104336 CTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCGTCCA-TCCTCGAGCTGCTTGCCAGCGA 104394 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 ||||||| ||||| ||||| || ||||| || ||||| || ||||| ||| | | Sbjct 104395 AAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATCTTGAATCTTGGACTTCACGT 104454 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||||| | ||| || || | ||| | ||| || || || ||||| || | Sbjct 104455 TGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGA 104514 Query 133648 CGAAAATCTGCAT 133660 |||| || ||||| Sbjct 104515 CGAAGATTTGCAT 104527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514 ||| | ||| ||||| ||||| || || || ||| | || || || ||||||||| Sbjct 104780 ATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGTTCGGCCG--TCCTCGAGC 104837 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| ||||| || || || |||||||| |||||||| |||| Sbjct 104838 TGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCTTGGATC 104897 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | ||||||| || ||| || || | |||| ||| |||||| Sbjct 104898 TTGCTCTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCG 104957 Query 133635 GT 133636 || Sbjct 104958 GT 104959 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || || ||||| ||||| ||||| || || |||||| Sbjct 104601 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTG 104660 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||| | | || || || | ||||| | Sbjct 104661 TCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATG 104720 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| || || ||||| ||||| Sbjct 104721 GTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755 >seq22 Length=1308897 Score = 113 bits (124), Expect = 4e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | || ||| | ||||| |||| Sbjct 1149369 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCA-TCCTCAAGCT 1149311 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | ||||| ||||| |||||||| || |||||||| ||||| Sbjct 1149310 GCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCT 1149251 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||||| | |||||| || | ||||| || || || | Sbjct 1149250 TGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCG 1149191 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | || || || ||||| ||||||||| || Sbjct 1149190 TGAGGGTCTTCACGAAGATCTGCATGACT 1149162 >seq24 Length=853129 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| || |||||||||||||| || || || |||||||| ||| ||| Sbjct 483429 AGGCATGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTC 483488 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || || | ||||| ||| | |||| | | || || || ||||| || ||| Sbjct 483489 AGACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAG 483548 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||| |||||| || || || |||| || | ||| || || | | ||||| Sbjct 483549 AAAATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAAGGTGGACTTCTTGTCT 483608 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 | ||||| | | ||||| |||||||| || Sbjct 483609 TGAATCCATCTAACTGCCCAATCGGCCTTCTT 483640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417416054400