Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq46 118 1e-21
seq22 113 4e-20
seq24 89.7 5e-13
>seq46
Length=1090308
Score = 118 bits (130), Expect = 1e-21
Identities = 143/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528
|| ||||| || ||||| |||| || || ||| | ||||||||||||||||| ||| |
Sbjct 104109 TCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCA-TCCTCGAGCTGCTTGCCAGCGAA 104167
Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588
|||||| ||||| ||||| || ||||| || |||||||| |||||| ||||| |
Sbjct 104168 AATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGACTTGACGTT 104227
Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648
|||| || || | || ||||| || | |||| || || || |||| || || ||
Sbjct 104228 GTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCAC 104287
Query 133649 GAAAATCTGCAT 133660
||||||||||||
Sbjct 104288 GAAAATCTGCAT 104299
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527
||| || || || ||||| |||| || || | | | ||||||||||||||||| |||
Sbjct 104336 CTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCGTCCA-TCCTCGAGCTGCTTGCCAGCGA 104394
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
||||||| ||||| ||||| || ||||| || ||||| || ||||| ||| | |
Sbjct 104395 AAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATCTTGAATCTTGGACTTCACGT 104454
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
|| | ||||||| | ||| || || | ||| | ||| || || || ||||| || |
Sbjct 104455 TGTCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGA 104514
Query 133648 CGAAAATCTGCAT 133660
|||| || |||||
Sbjct 104515 CGAAGATTTGCAT 104527
Score = 98.7 bits (108), Expect = 1e-15
Identities = 132/182 (73%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514
||| | ||| ||||| ||||| || || || ||| | || || || |||||||||
Sbjct 104780 ATGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGTTCGGCCG--TCCTCGAGC 104837
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| | ||||| ||||| || || || |||||||| |||||||| ||||
Sbjct 104838 TGCTTGCCAGCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCTTGGATC 104897
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | ||||||| || ||| || || | |||| ||| ||||||
Sbjct 104898 TTGCTCTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCG 104957
Query 133635 GT 133636
||
Sbjct 104958 GT 104959
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| || | || || ||||| ||||| ||||| || || ||||||
Sbjct 104601 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTG 104660
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||||| ||||| | |||| ||||| | | || || || | ||||| |
Sbjct 104661 TCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATG 104720
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| || ||||| || || ||||| |||||
Sbjct 104721 GTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
>seq22
Length=1308897
Score = 113 bits (124), Expect = 4e-20
Identities = 152/209 (73%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||||||||| ||||| || ||||| ||| | || ||| | ||||| ||||
Sbjct 1149369 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCA-TCCTCAAGCT 1149311
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| || | || | ||||| ||||| |||||||| || |||||||| |||||
Sbjct 1149310 GCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCT 1149251
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | || | ||||||| | |||||| || | ||||| || || || |
Sbjct 1149250 TGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCG 1149191
Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664
| || || || ||||| ||||||||| ||
Sbjct 1149190 TGAGGGTCTTCACGAAGATCTGCATGACT 1149162
>seq24
Length=853129
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| |||||||| || |||||||||||||| || || || |||||||| ||| |||
Sbjct 483429 AGGCATGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTC 483488
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
|| || | ||||| ||| | |||| | | || || || ||||| || |||
Sbjct 483489 AGACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAG 483548
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819
|| | ||| |||||| || || || |||| || | ||| || || | | |||||
Sbjct 483549 AAAATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAAGGTGGACTTCTTGTCT 483608
Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851
| ||||| | | ||||| |||||||| ||
Sbjct 483609 TGAATCCATCTAACTGCCCAATCGGCCTTCTT 483640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483417416054400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |