Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq73 161 2e-34 >seq73 Length=484926 Score = 161 bits (178), Expect = 2e-34 Identities = 505/775 (65%), Gaps = 9/775 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| || | || ||| | || | || ||| | ||| || | || Sbjct 50507 TATTTTGGATTCAAGACATTGGAGCGTTCATACCTCCTCCGTCTTAATAACGCCGTGGTT 50566 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || || || ||||||||| | | ||||| || ||||||| ||||| | |||||| || Sbjct 50567 GAGCGCCCACAACACATGATCATGCGTGTGGCTGTTGGTATCCATGGCGAAGATATTGAA 50626 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 | | || || || | | | || ||| | | |||||| ||||||| Sbjct 50627 TCCGCAATCGAGACATACAACTTGATGTCGAACAAGTACTTCACACATGCTTCTCCTACA 50686 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 || || | || ||||| | | || || | || ||||| || ||| || || Sbjct 50687 CTCTTCAGTGCTGGAACCCCTCAGGCTCAGATGTCATCATGCTTCCTCGTAGATATGAAG 50746 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 || || ||||| ||||| |||||| | || || | |||| | ||||| || || Sbjct 50747 GAAGACAGCATTGATGGTATCTATGATACCCTGAAGACATGTGCTATGATTTCGAAGAAT 50806 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGC--AAATATCGCAA 110661 | || || |||||| | | | || || || | | || | | || || | Sbjct 50807 GCCGGTGGCATTGGTCTCAATATCCACAGAATCCGAGCTACTGGCTCCTACATTTC-CGG 50865 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 || | | || | || || ||| |||| |||||| | | || |||||| |||| || | Sbjct 50866 CACCAACGGTTTCTCGAA-TGGTATTGTGCCAATGCTGCGTGTTTTCAACAACACAGCCA 50924 Query 110722 AATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| ||||||||||||| | | ||| | ||||||||||| || || || | Sbjct 50925 GATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACCTTGAGCCAT 50984 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 |||| | ||| | || || ||| | || || | || ||||| || || ||| Sbjct 50985 GGCACGCTGATGTCTTCGAGTTCCTCGATCTCAGAAAGAATCATGGTAAGGAGGAAGTTC 51044 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 | ||||| ||| | || ||||| |||||||| | ||| | |||||||| | ||| | Sbjct 51045 GTGCACGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTGAGA 51104 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 |||| || |||| | || |||||||| || | |||||||||| | ||||| || | Sbjct 51105 AAAACGGAGAGTGGACCCTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATGTCTACG 51164 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA 111018 || | |||||||||| | ||||| || ||||| || |||||| || ||| | Sbjct 51165 GAGATGAGTTTGAAGCTTTGTACGAGAAGTATGAGCGCGAGGGCAAGGGCCG-AAAGACC 51223 Query 111019 TTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072 | | |||||| | || |||| ||||||||| ||||| || ||||||| Sbjct 51224 GTAAAGGCTCAAAAGCTCTGGTATTCCATCCTTGAAGCACAAACCGAGACTGGAA 51278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186804284618160