Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq46 89.7 1e-12
>seq46
Length=1090308
Score = 89.7 bits (98), Expect = 1e-12
Identities = 138/196 (70%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| ||| || ||||| || || || ||||| | || || ||| || ||||| |
Sbjct 104747 TTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCAGACACCAT 104688
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|| || ||| |||||||| || || || |||||| |||||| || | ||
Sbjct 104687 TGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAACAGCGTCT 104628
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||||| || || |||||| | || ||||| | ||| | | || |||||| |||| ||
Sbjct 104627 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAACATCCAAAA 104568
Query 206358 AGAGTCTACTCTTCAC 206373
||| ||||||||||||
Sbjct 104567 AGAATCTACTCTTCAC 104552
Score = 87.8 bits (96), Expect = 4e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| || ||||| || || || || || |||||||| || || ||||| ||||
Sbjct 104513 CAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCCGACACCATCGACAA 104454
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| ||||||||||| || || || || |||||| || | || || ||
Sbjct 104453 CGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAACAGCGTCTCATTTT 104394
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||| | || |||||| | |||||| ||| |||||| |||| || |||
Sbjct 104393 CGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAACATCCAAAAGGAGAG 104334
Query 206364 TACTCTTCACCTTGTT 206379
||||| ||| | |||
Sbjct 104333 CACTCTCCACTTGGTT 104318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181812320435760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |