Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq46 116 4e-21
seq22 107 2e-18
>seq46
Length=1090308
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| || ||| |||||||| |||||||||||||
Sbjct 104301 CCACCACGGAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 104360
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || |||||||| ||||| || ||||| | |||||| || || || ||
Sbjct 104361 AAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGG 104420
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || |||||||| || || || ||| | ||||||||||| || ||
Sbjct 104421 ATACCCTCCTTATCTTGAATCTTGGACTTCACGTTGTCGATGGTGTCGGACGACTCAACT 104480
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | |||||||| ||||| || | ||| || ||||| ||||||||
Sbjct 104481 TCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 104527
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
|||||| ||| |||||| || ||||||||||||| | || || || ||||||||
Sbjct 104096 GTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGCTG 104155
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| || ||||| | |||||| || || || || || || || || || || || ||
Sbjct 104156 CTTGCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTT 104215
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||||| ||| | || || || |||||||| || ||||| || || || || ||
Sbjct 104216 AGACTTGACGTTGTCAATGGTATCCGAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGT 104275
Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713
|| || || |||||||| |||||
Sbjct 104276 CAATGTCTTCACGAAAATCTGCAT 104299
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| || || ||||| ||||| |||||||||||
Sbjct 104529 CCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 104588
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || || ||||| ||||| ||||| |||| |||||| || || || ||
Sbjct 104589 AGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 104648
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | ||||| |||||||| ||
Sbjct 104649 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACC 104708
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| || || || | ||| || || |||||||||||
Sbjct 104709 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAAATTTGCAT 104755
>seq22
Length=1308897
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||||| || || ||||| ||||| || ||||||||||||
Sbjct 1149392 CCACCACGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1149333
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || || || ||||| ||||| ||||| ||||| ||||| || || || ||
Sbjct 1149332 AGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGAGGG 1149273
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | |||||||| || |||||
Sbjct 1149272 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1149213
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || || || || | || || ||||| || |||||
Sbjct 1149212 TCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 1149166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505394862211200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |