Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq46 116 3e-21
>seq46
Length=1090308
Score = 116 bits (128), Expect = 3e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116
|| ||||| || ||||||||||||| | || | || |||||||| || || ||| ||
Sbjct 104337 TCCTTTTGGATGTTGTAGTCGCTCAAAGTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAA 104396
Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176
|||||||||||||| ||||| || | |||||| ||||| |||||| |||| | |
Sbjct 104397 ATGAGACGCTGTTGGTCCGGTGGGATACCCTCCTTATCTTGAATCTTGGACTTCACGTTG 104456
Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236
|| | ||||| | | |||||||| | || || | || || || ||||| || ||
Sbjct 104457 TCGATGGTGTCGGACGACTCAACTTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACG 104516
Query 27237 AAGATTTGCATA 27248
||||||||||||
Sbjct 104517 AAGATTTGCATA 104528
Score = 109 bits (120), Expect = 5e-19
Identities = 169/240 (70%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 27010 cATAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATA 27068
|||| ||| || || || || | || | ||||| |||| || || || || ||
Sbjct 104061 CATATTTACTGGCCACCACGAAGACGGAGGACCAAGTGTAGAGTGCTTTCCTTCTGGATG 104120
Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128
||||||||||||| | || | || |||||||| || || ||| ||||||||||||||
Sbjct 104121 TTGTAGTCGCTCAAAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGT 104180
Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188
|| ||||| || | |||||| || || |||||| || | | | || | || ||
Sbjct 104181 TGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCAATGGTATCC 104240
Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| || ||| ||||| ||||| |||| || || |||| || ||||| || || ||||||
Sbjct 104241 GAGGATTCCACTTCCAGAGTGATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCATA 104300
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||||| |||||||| || |||||||| | | || | || ||
Sbjct 104547 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCA 104606
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || || | || ||||||||||| ||||| || | ||||| || ||
Sbjct 104607 AGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATTCCCTCCTTGTCCTGA 104666
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||||||| | ||| || || || || || | |||
Sbjct 104667 ATCTTGGACTTGACGTTGTCAATGGTGTCTGACGATTCGACCTCAAGGGTGATGGTCTTG 104726
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || ||||| || ||||| |||||||||
Sbjct 104727 CCAGTGAGAGTCTTGACAAAAATTTGCATA 104756
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || || || |||||| | | | || |||| |||||||| || ||
Sbjct 104787 GTAGACTCCTTCTGGATGTTATAGTCGGAAAGGGTTCGGCCGTCCTCGAGCTGCTTGCCA 104846
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | |||||||||||||||||||| || | ||||| || || ||||||| | ||
Sbjct 104847 GCGAAGATGAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTA 104906
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
| | | || | ||||| | || || || || ||||| || | ||||| ||
Sbjct 104907 ACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 104959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424931499822720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |