Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq73 262 5e-65 seq16 102 1e-16 seq1 82.4 1e-10 >seq73 Length=484926 Score = 262 bits (290), Expect = 5e-65 Identities = 1022/1579 (65%), Gaps = 33/1579 (2%) Strand=Plus/Minus Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583 ||| ||||| || || |||||| ||| ||||| |||||| | | |||||||| Sbjct 52135 AATCTCCCAGACGGTCTTGTAGAGAGCCTTAATATCTGATGGGATGTTGGGAATATTCTG 52076 Query 110584 GATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTT 110643 ||||||||| || | | ||| | | |||||| | | |||||||| || || | Sbjct 52075 GATGGAACCACCATCAGCGATAATGCGGTTCTTCATGTTGTCAGACCAGAGTCCCATATC 52016 Query 110644 CTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCT 110703 || || |||| || ||| || | ||||| ||||| || | | Sbjct 52015 GACAAGATCCTTGAGAAGCCAAGGGTTCACCACCTGGAACTCTCCTGCAAGCACACGGCG 51956 Query 110704 CAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGT 110763 ||| ||||| | |||||||| |||||||| || || ||| | ||| || || Sbjct 51955 GGAGTAAATGTTGGAGGTGTATGGCTCAAAGCACTCGTTGAAACCAAGGATCTGGCTAGT 51896 Query 110764 GGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCG 110823 | ||| |||||||| || || | || ||||||||| || | || | | |||||| | Sbjct 51895 GCTGGCAGTTGGCATAGGAGCAACCAGAAGACTGTTGCGGATGCCATGTTGCTTGATCTG 51836 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAAC 110881 | ||| | |||||| || || || || || | || | ||||||| ||| | Sbjct 51835 CTGCTTCAAGCTATCCCAATCCCAGA-GATCTGTAGGAGTGAC-TCCCCACATATCATAT 51778 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACC-TTGGGCTTC 110940 |||||| | |||| ||||| || || || ||| | || ||||| | || || ||| Sbjct 51777 TGAAGCTCTCCTTTCGACGCAGGGGATCCTTCATATGTCTCATACGGGCCATTAATCTTG 51718 Query 110941 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 || | || | || || | |||| || || || || ||||| || ||| Sbjct 51717 -GCAAGCTCTACGGAAGCAGTAAGAGCACCGTGGTAGATAGTCTCGAAGATTTGAATATT 51659 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCG 111058 | | ||| || ||| ||| ||||| | | | ||| | || ||| ||||||| Sbjct 51658 GAGATGCTTTGCCTCAGGTGAGTCAAAAG-GAACACGCAGAGCCAAGAAAG-CATCCGCC 51601 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 | || || ||||| | |||| || | || || | || ||| | || ||| Sbjct 51600 AATCCCTGTACACCAACTGCAATGGGACGATGACGGAAGTTGCTCTTCCTTGCC-TCTGG 51542 Query 111119 -ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GA 111176 ||||| || | || || |||| ||| | || |||||||||| ||| | || Sbjct 51541 GACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGTAACAA-CTTGGACGA 51483 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 ||| ||||| || | | ||| |||| | | | | || ||| | | ||||| | Sbjct 51482 CTTCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCATATCCACAAAGGTGGGAAGTG 51423 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | || || ||||| ||||| ||||| ||||||| | || ||| || | ||| |||| Sbjct 51422 CAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCTG 51363 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || |||||||| || || || |||| ||||| ||||| ||||| |||||||| Sbjct 51362 TGCACAAGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCACG 51303 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 ||||||||||||||||| | || | || ||||| || |||| || || || | | || Sbjct 51302 CATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACC 51243 Query 111417 A-AACATCGGCGGCTGGTACAATGGCGTT-GGCCCGT-CCCTCCGCCTCGTACTTTGTGT 111473 | | | | | | || ||| | | || ||||| | ||||| ||| ||||| || Sbjct 51242 AGAGCTTTTGAGCCT-TTAC--GGTCTTTCGGCCCTTGCCCTCGCGCTCATACTTCTCGT 51186 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | | ||||||||||| || || | || | ||||| || || | |||||| | Sbjct 51185 ACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGGACACA 51126 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 || | ||| | || || |||||||| ||||||||| || || |||||||||| || Sbjct 51125 TCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGG 51066 Query 111594 ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 | |||||||| | | || ||| | || || | ||| || || || | || ||| Sbjct 51065 CATAGAAGAGATCGCGTGCA-CGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGG 51007 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 111712 ||||| | || ||| ||||||||||||||||| |||| || | | || ||||| Sbjct 51006 AACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACC---AGGACGC 50950 Query 111713 ------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 ||| |||||| ||||| | |||||| ||| || || || |||||||| | | Sbjct 50949 TTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACA 50890 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826 ||||||| || ||| || || || ||| || | | |||| | ||| Sbjct 50889 ATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGTGG 50830 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 || | | ||||| || || || ||| || || ||||| | | || || || Sbjct 50829 ATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCA 50770 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 |||||||| | || ||| ||||| | | | |||||||| |||||||| | Sbjct 50769 TAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAGCC 50710 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 112005 || || |||||| ||||||| || || | || || |||| ||| | | ||||| Sbjct 50709 TGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAA-GTACTTGTTCGACAT 50651 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 | || ||||||||| | | || ||||| ||||| || ||||| || | || || || Sbjct 50650 CAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACACG 50591 Query 112066 CATGAACATGTACTGTGGG 112084 ||||| ||||| |||||| Sbjct 50590 CATGATCATGTGTTGTGGG 50572 >seq16 Length=379189 Score = 102 bits (112), Expect = 1e-16 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 11688 |||||||||||||| ||||||| ||| |||||| || | || | ||| | | ||||| Sbjct 192711 GCATCAATCTCATCGATGAAGATAATGCATGGTGTGCTCTT-TCTTGCGGTAGCGAAGAG 192653 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAG 11746 ||| || || || |||||| ||||| || ||||| ||||| || | | | || || Sbjct 192652 ATCCCGCACTCTGGAGGCACCAACACCGACGAACATTTCCACGAACTCGGAACCGCTGA- 192594 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || || ||| ||||| | || ||||| ||| | || ||| ||||| ||||| || Sbjct 192593 CGCT-GAAGAAGGGGACCTGCGACTCACCAGCGGTAGCCTTGGCTAGGAGAGTCTTACCA 192535 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 ||||| || || | | | || ||||| ||||||||||||||| Sbjct 192534 GTACCAGGAGGTCCAGACAAGATAGCTCCTCGAGGGATCTTGGCACCA 192487 >seq1 Length=824168 Score = 82.4 bits (90), Expect = 1e-10 Identities = 168/250 (67%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| ||| | || || || || |||||||| ||||| ||| ||||| | Sbjct 648466 ATGGACGTATCGCTCCCCGCTCTGGTCTCGCCTCTAAGCACTCAATTTCTACGGGTGCTG 648407 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| ||||| | || ||| ||| || || ||| | ||||||||||| ||||| Sbjct 648406 GTGTGATTGACGCTGATTATCGAGGACCTGTAAAGGTCTTGCTCTTCAATCATGGAGAGG 648347 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAAA 164784 ||||| |||| | || |||| ||||| || |||||| | ||| | ||| | | | Sbjct 648346 TAGACTATGAGATCAAAGAAGGCGATCGTATTGCACAATTGGTCTTGGAGAGGATCTATA 648287 Query 164785 CACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGGTGGATTTG 164844 | || || || | || | | | | || ||||| | ||||||||||||||||||| Sbjct 648286 CCCCGGAAGTCCAAGAGGTGGAGGAATTGGATGAGACTGTTAGAGGTGCGGGTGGATTTG 648227 Query 164845 GATCTACTGG 164854 || ||| || Sbjct 648226 GAAGTACCGG 648217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027603776000