Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq73 262 5e-65
seq16 102 1e-16
seq1 82.4 1e-10
>seq73
Length=484926
Score = 262 bits (290), Expect = 5e-65
Identities = 1022/1579 (65%), Gaps = 33/1579 (2%)
Strand=Plus/Minus
Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583
||| ||||| || || |||||| ||| ||||| |||||| | | ||||||||
Sbjct 52135 AATCTCCCAGACGGTCTTGTAGAGAGCCTTAATATCTGATGGGATGTTGGGAATATTCTG 52076
Query 110584 GATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTT 110643
||||||||| || | | ||| | | |||||| | | |||||||| || || |
Sbjct 52075 GATGGAACCACCATCAGCGATAATGCGGTTCTTCATGTTGTCAGACCAGAGTCCCATATC 52016
Query 110644 CTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCT 110703
|| || |||| || ||| || | ||||| ||||| || | |
Sbjct 52015 GACAAGATCCTTGAGAAGCCAAGGGTTCACCACCTGGAACTCTCCTGCAAGCACACGGCG 51956
Query 110704 CAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGT 110763
||| ||||| | |||||||| |||||||| || || ||| | ||| || ||
Sbjct 51955 GGAGTAAATGTTGGAGGTGTATGGCTCAAAGCACTCGTTGAAACCAAGGATCTGGCTAGT 51896
Query 110764 GGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCG 110823
| ||| |||||||| || || | || ||||||||| || | || | | |||||| |
Sbjct 51895 GCTGGCAGTTGGCATAGGAGCAACCAGAAGACTGTTGCGGATGCCATGTTGCTTGATCTG 51836
Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAAC 110881
| ||| | |||||| || || || || || | || | ||||||| ||| |
Sbjct 51835 CTGCTTCAAGCTATCCCAATCCCAGA-GATCTGTAGGAGTGAC-TCCCCACATATCATAT 51778
Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACC-TTGGGCTTC 110940
|||||| | |||| ||||| || || || ||| | || ||||| | || || |||
Sbjct 51777 TGAAGCTCTCCTTTCGACGCAGGGGATCCTTCATATGTCTCATACGGGCCATTAATCTTG 51718
Query 110941 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000
|| | || | || || | |||| || || || || ||||| || |||
Sbjct 51717 -GCAAGCTCTACGGAAGCAGTAAGAGCACCGTGGTAGATAGTCTCGAAGATTTGAATATT 51659
Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCG 111058
| | ||| || ||| ||| ||||| | | | ||| | || ||| |||||||
Sbjct 51658 GAGATGCTTTGCCTCAGGTGAGTCAAAAG-GAACACGCAGAGCCAAGAAAG-CATCCGCC 51601
Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118
| || || ||||| | |||| || | || || | || ||| | || |||
Sbjct 51600 AATCCCTGTACACCAACTGCAATGGGACGATGACGGAAGTTGCTCTTCCTTGCC-TCTGG 51542
Query 111119 -ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GA 111176
||||| || | || || |||| ||| | || |||||||||| ||| | ||
Sbjct 51541 GACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGTAACAA-CTTGGACGA 51483
Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236
||| ||||| || | | ||| |||| | | | | || ||| | | ||||| |
Sbjct 51482 CTTCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCATATCCACAAAGGTGGGAAGTG 51423
Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296
| || || ||||| ||||| ||||| ||||||| | || ||| || | ||| ||||
Sbjct 51422 CAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCTG 51363
Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356
| || |||||||| || || || |||| ||||| ||||| ||||| ||||||||
Sbjct 51362 TGCACAAGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCACG 51303
Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416
||||||||||||||||| | || | || ||||| || |||| || || || | | ||
Sbjct 51302 CATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACC 51243
Query 111417 A-AACATCGGCGGCTGGTACAATGGCGTT-GGCCCGT-CCCTCCGCCTCGTACTTTGTGT 111473
| | | | | | || ||| | | || ||||| | ||||| ||| ||||| ||
Sbjct 51242 AGAGCTTTTGAGCCT-TTAC--GGTCTTTCGGCCCTTGCCCTCGCGCTCATACTTCTCGT 51186
Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533
| | ||||||||||| || || | || | ||||| || || | |||||| |
Sbjct 51185 ACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGGACACA 51126
Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593
|| | ||| | || || |||||||| ||||||||| || || |||||||||| ||
Sbjct 51125 TCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGG 51066
Query 111594 ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652
| |||||||| | | || ||| | || || | ||| || || || | || |||
Sbjct 51065 CATAGAAGAGATCGCGTGCA-CGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGG 51007
Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 111712
||||| | || ||| ||||||||||||||||| |||| || | | || |||||
Sbjct 51006 AACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACC---AGGACGC 50950
Query 111713 ------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766
||| |||||| ||||| | |||||| ||| || || || |||||||| | |
Sbjct 50949 TTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACA 50890
Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826
||||||| || ||| || || || ||| || | | |||| | |||
Sbjct 50889 ATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTGTGG 50830
Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886
|| | | ||||| || || || ||| || || ||||| | | || || ||
Sbjct 50829 ATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCA 50770
Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946
|||||||| | || ||| ||||| | | | |||||||| |||||||| |
Sbjct 50769 TAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGAGCC 50710
Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 112005
|| || |||||| ||||||| || || | || || |||| ||| | | |||||
Sbjct 50709 TGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAA-GTACTTGTTCGACAT 50651
Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065
| || ||||||||| | | || ||||| ||||| || ||||| || | || || ||
Sbjct 50650 CAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACACG 50591
Query 112066 CATGAACATGTACTGTGGG 112084
||||| ||||| ||||||
Sbjct 50590 CATGATCATGTGTTGTGGG 50572
>seq16
Length=379189
Score = 102 bits (112), Expect = 1e-16
Identities = 163/228 (71%), Gaps = 6/228 (3%)
Strand=Plus/Minus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 11688
|||||||||||||| ||||||| ||| |||||| || | || | ||| | | |||||
Sbjct 192711 GCATCAATCTCATCGATGAAGATAATGCATGGTGTGCTCTT-TCTTGCGGTAGCGAAGAG 192653
Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAG 11746
||| || || || |||||| ||||| || ||||| ||||| || | | | || ||
Sbjct 192652 ATCCCGCACTCTGGAGGCACCAACACCGACGAACATTTCCACGAACTCGGAACCGCTGA- 192594
Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806
| || || ||| ||||| | || ||||| ||| | || ||| ||||| ||||| ||
Sbjct 192593 CGCT-GAAGAAGGGGACCTGCGACTCACCAGCGGTAGCCTTGGCTAGGAGAGTCTTACCA 192535
Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854
||||| || || | | | || ||||| |||||||||||||||
Sbjct 192534 GTACCAGGAGGTCCAGACAAGATAGCTCCTCGAGGGATCTTGGCACCA 192487
>seq1
Length=824168
Score = 82.4 bits (90), Expect = 1e-10
Identities = 168/250 (67%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664
|||| ||| | || || || || |||||||| ||||| ||| ||||| |
Sbjct 648466 ATGGACGTATCGCTCCCCGCTCTGGTCTCGCCTCTAAGCACTCAATTTCTACGGGTGCTG 648407
Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724
|||| ||||| | || ||| ||| || || ||| | ||||||||||| |||||
Sbjct 648406 GTGTGATTGACGCTGATTATCGAGGACCTGTAAAGGTCTTGCTCTTCAATCATGGAGAGG 648347
Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAAA 164784
||||| |||| | || |||| ||||| || |||||| | ||| | ||| | | |
Sbjct 648346 TAGACTATGAGATCAAAGAAGGCGATCGTATTGCACAATTGGTCTTGGAGAGGATCTATA 648287
Query 164785 CACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGGTGGATTTG 164844
| || || || | || | | | | || ||||| | |||||||||||||||||||
Sbjct 648286 CCCCGGAAGTCCAAGAGGTGGAGGAATTGGATGAGACTGTTAGAGGTGCGGGTGGATTTG 648227
Query 164845 GATCTACTGG 164854
|| ||| ||
Sbjct 648226 GAAGTACCGG 648217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628027603776000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |