Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq73 224 1e-53 seq24 109 7e-19 >seq73 Length=484926 Score = 224 bits (248), Expect = 1e-53 Identities = 1119/1757 (64%), Gaps = 49/1757 (3%) Strand=Plus/Minus Query 117827 GGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATG 117886 |||| ||| ||||| || ||||| || ||||| | || |||||||| || | ||| Sbjct 52306 GGCCATTGTGCGGAGATAATACATGCCGGTCTTCAAGCCAAGCTTCCAGCCAGTGAAATG 52247 Query 117887 CATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 117946 ||| | | |||| | ||| || | |||| | |||||| ||||| || Sbjct 52246 CATGCTTGTGATCTTGCCCATGGTGGGGTCCTTCATGTGAATGTTCATTGACTGGGACTG 52187 Query 117947 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTC 118003 ||| ||||| || || || || ||||| | |||| || || || || Sbjct 52186 ATCAATGAAAGCACCACGGTCAGCAGCCATCTG---CACAATGTTACGCTGAGAAATCTC 52130 Query 118004 CCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGA 118063 ||| || ||| ||||||| ||||||||| |||||| | ||||| |||||||| Sbjct 52129 CCAGACGGTCTTGTAGAGAGCCTTAATATCTGATGGGATGTTGGGAATATTCTGGATGGA 52070 Query 118064 TCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAG 118123 ||||| | || ||| | | |||||| | | |||||||| || || | || Sbjct 52069 ACCACCATCAGCGATAATGCGGTTCTTCATGTTGTCAGACCAGAGTCCCATATCGACAAG 52010 Query 118124 ATCCTCCACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAG 118180 ||||| |||| || | || || || ||||| || || || || | Sbjct 52009 ATCCTT---GAGAAGCCAAGGGTTCACCACCTGGAACTCTCCTGCAAGCACACGGCGGGA 51953 Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 || || |||| |||||||||||||||||||| ||| ||| | ||| ||| ||| Sbjct 51952 GTAAATGTTGGAGGTGTATGGCTCAAAGCACTCGTTGAAACCAAGGATCTGGCTAGTGCT 51893 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 ||| || ||||| || || | ||||| ||||| |||| || | || | | || | | Sbjct 51892 GGCAGTTGGCATAGGAGCAACCAGAAGACTGTTGCGGATGCCATGTTGCTTGATCTGCTG 51833 Query 118301 CTTGAGAGCG-TCCCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAAC 118355 ||| | ||| ||||| || || || || | || | ||| ||||||||| | Sbjct 51832 CTTCA-AGCTATCCCAATCCCAGA-GATCTGTAGGAGTGACTCCC---CACATATCATAT 51778 Query 118356 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 118415 || || |||| ||||| || ||||| ||| |||||||||| ||||| | || || Sbjct 51777 TGAAGCTCTCCTTTCGACGCAGGGGATCCTTCATATGTCTCATACGGGCCATTAATCTTG 51718 Query 118416 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 || | || | || || || |||| || || || || || || || ||| Sbjct 51717 GCAAGCTCTACGGAAGCAGTAAGAGCACCGTGGTAGATAGTCTCGAAGATTTGAATATTG 51658 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA--AATAAATACATCCGCGA 118533 | ||| ||||| || ||||| | | || || | || ||| ||||||| | Sbjct 51657 AGATGCTTTGCCTCAGGTGAGTCAAAAGGAACACG-CAGAGCCAAGAAAG-CATCCGCCA 51600 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC- 118592 || || ||||| | |||| || ||||| | | || ||||| || ||| Sbjct 51599 ATCCCTGTACACCAACTGCAATGGGACGATGACGGAAGTTGCTCTTCCTTGCC-TCTGGG 51541 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 ||||| || | || |||||| | | | || | || ||||| ||||| | || | Sbjct 51540 ACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGTAACAACTTGGACGACT 51481 Query 118653 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 || |||||||| | | | ||| || | | | | | || ||| | | ||||| || Sbjct 51480 TCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCATATCCACAAAGGTGGGAAGTGCA 51421 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || |||| || || |||| ||||||| | | ||| || | ||| || ||| Sbjct 51420 ATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTCTGTG 51361 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 |||||||| || || || || |||| |||||| || || ||| ||| |||||| Sbjct 51360 CACAAGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCACGCA 51301 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| |||| | || ||||| ||||| | | || || | | |||| Sbjct 51300 TCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGAATACCAG 51241 Query 118893 ACATCGGCAGCTGGCACAGTGGCGTT-GGCTC-GCCCCTCTTCCTCGTACTTTGTGTAGA 118950 | | ||| || || | || ||| | ||||| ||| ||||| ||| | Sbjct 51240 AGCTTTTGAGCCTTTACGGT--CTTTCGGCCCTTGCCCTCGCGCTCATACTTCTCGTACA 51183 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 ||||||||||| || || | | |||| || || || || || ||| || | | Sbjct 51182 AAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTGGACACATCA 51123 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | | ||| | || | |||||||| |||||||||||| || || ||||| | || Sbjct 51122 GGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCCACAAGGCAT 51063 Query 119071 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130 |||||||||| || ||| |||| || | || ||||| | | || | || | Sbjct 51062 AGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGATCGAGGAACT 51003 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG----- 119185 | | || ||| |||||||| || || ||||| | || | | || | |||| Sbjct 51002 CGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACC---AGGACGCTTGT 50946 Query 119186 -ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 |||| | || | ||||| || || ||| ||| || ||||| |||||||| | |||| Sbjct 50945 TACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGCACAATAC 50886 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGAT 119302 ||| || || || || || || || ||| | | | |||| || |||||| Sbjct 50885 CATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCC--AGTAGCTCGGATTCTGTGGAT 50828 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 | | |||||| || || || ||| || || || || | | || | | || Sbjct 50827 ATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTATCATA 50768 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 ||| ||||| || ||| |||| | | | ||||||||| ||||| ||| |||| Sbjct 50767 GATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGA-GCCT 50709 Query 119423 G-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 119480 | || || ||||| ||||||| || || | || || |||| ||| | | |||||| Sbjct 50708 GAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAA-GTACTTGTTCGACATC 50650 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 || ||| ||||| | ||| ||| ||||| || || ||||| | | || ||| Sbjct 50649 AAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACACGC 50590 Query 119541 ATAAACATGTATTGGGG 119557 || | ||||| ||| || Sbjct 50589 ATGATCATGTGTTGTGG 50573 >seq24 Length=853129 Score = 109 bits (120), Expect = 7e-19 Identities = 340/516 (66%), Gaps = 14/516 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || |||||||||||||| |||||||| ||||| || | | |||||||||||| Sbjct 483147 TAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTCTCCATG 483206 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| ||| || | ||| || | |||| | | || || Sbjct 483207 AAGTCGAAGGGGTTTGCTGACTTGTAGTATTTCTCGTTA-CCAAGAGCCGTCAAAAGTCG 483265 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||| || || | ||| |||||||||| |||| | | ||| Sbjct 483266 ATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAGTAAGGCACA 483325 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | ||| | | ||||||| | |||||||| | ||| | || Sbjct 483326 GGGGAGAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGATGATATCCTG 483385 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG---GCAAACTC 130023 | | || ||| || | | || |||| ||| | | | | ||||| || Sbjct 483386 GACAGCCTGTTTGCTTGGGCGGT-GCTTCAAGTGA-GAAAA-TAGAAGGCATGCAAAGTC 483442 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 || || ||||||||||| |||||||| || ||||| ||| |||||| | |||||| Sbjct 483443 GGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACCAGCCATGAG 483502 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||||| ||| || || || ||| || ||| |||||| || || ||||| Sbjct 483503 GCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAATGCCTTCCAC 483562 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGT-ATCAAACCACTT 130200 ||||| |||| | ||| | || |||| ||||| |||| | || ||| | Sbjct 483563 GGCAGCGAATGCAACCAAACGTTGGGCGAAGG---TGGACTTCTTGTCTTGAATCCATCT 483619 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 | ||||| | ||||| |||| ||| || ||||| Sbjct 483620 AACTGCCCAATCGGCCTTCTTCTTGATGCAGGGGAC 483655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430870953600