Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq73 268 1e-66 seq24 98.7 1e-15 seq16 98.7 1e-15 >seq73 Length=484926 Score = 268 bits (296), Expect = 1e-66 Identities = 910/1396 (65%), Gaps = 35/1396 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| ||||| ||||||| ||||| | ||||| ||||| ||||| ||||| || | Sbjct 50572 CCCACAACACATGATCATGCGTGTGGCTGTTGGTATCCATGGCGAAGATATTGAATCCGC 50631 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| || |||||| | | ||| |||| || || | || || |||| Sbjct 50632 AATCGAGACATACAACTTGATGTCGAACAAGTAC-TTCACACATGCTTCTCCTACACTCT 50690 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||| |||||| || || | || ||||| |||||||| | | | ||||| | Sbjct 50691 TCAGTGCTGGAACCCCTCAGGCTCAGATGTCATCATGCTTCCTCGTAGATATGAAGGAAG 50750 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||||| || || | | ||||| || || ||| || | Sbjct 50751 ACAGCATTGATGGTATCTATGATACCCTGAAGACATGTGCTATGATTTCGAAGAATGCCG 50810 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | | ||||| | |||| | | || ||| || || | Sbjct 50811 GTGGCATTGGTCTCAATATCCACAGAATCCGAGCTACTGGCTCCTACATTTCCGGCACCA 50870 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || |||||||| | |||||||| || || || ||| |||||| | |||| Sbjct 50871 ACGGTTTCTCGAATGGTATTGTGCCAATGCTGCGTGTTTTCAACAACACAGCCAGATATG 50930 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | |||||| ||| ||||| || | | || |||| ||||||||||||| Sbjct 50931 TTGATCAAGGTGGTAACAAGCGTCCT---GGTGCCTTTGCTATCTACCTTGAGCCATGGC 50987 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | |||||||| || | | || || ||| | ||||| | | || Sbjct 50988 ACGCTGATGTCTTCGAGTTCCTCGATCTCAGAAAGAATCATGGTAAGGAGGAAGTTC-GT 51046 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||||||||||| || | |||||||| ||||||||||||||||| |||||| | Sbjct 51047 GCACGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTGAGAAA 51106 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | || | ||| | || | |||||| | || |||||||| | |||| | || Sbjct 51107 AACGGAGAGTGGACCCTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATGTCTACGGA 51166 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG--TCGGGCGACTGCGACGG 104870 || ||||||||||| | ||| ||||| ||| || || || ||| ||| | Sbjct 51167 GATGAGTTTGAAGCTTTGTACGAGAAGTATGAGCGCGAGGGCAAGGGCCGA--AAGACCG 51224 Query 104871 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | ||| | | ||| | | || || | | |||||||||||||| | |||| Sbjct 51225 TAAAGGCTCAAAAGCTCTGGTATTCCATCCTTGAAGCACAAACCGAGACTGGAAACCCAT 51284 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 |||||| ||||| || || || |||| ||||| || || ||||| |||| ||| Sbjct 51285 TCATGCTCTACAAGGATGCGTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACTATCC 51344 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || ||||| | || ||||| || | |||| || |||||| ||||| | Sbjct 51345 GTAGCTCCAACTTGTGCACAGAGATTGTCGAATACTCATCTGCGGATGAGGTTGCTGTCT 51404 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACATTTGA 105108 | ||| | || || || || || |||| | ||||||| | |||| ||| | ||| Sbjct 51405 GCAACTTGGCCTCTATTGCACTTCCCACCTTTGTGGAT--ATGAACAATGGGACTTATGA 51462 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | || || |||||||| || ||| ||||| ||| | |||| | || || Sbjct 51463 CTTCCAGAAGCTTCACGAAGTCGTCCAAGTTGTTACCAAGAACTTGAACAAGATCATCGA 51522 Query 105169 TAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | |||||||| ||| || | || || | | || ||||| |||| Sbjct 51523 TGTTAACTACTACCCCGTCCCAGA-GGCAAGGAAGAGCAACTTCCGTCATCGTCCCATTG 51581 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCC 105286 | ||||| ||||| | ||||||| ||| | || || || | ||||| || Sbjct 51582 CAGTTGGTGTACAGGGATTGGCGGATGCTTTCTTGGCTCTG-CGTGTTCCTTTTGACTCA 51640 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 || || ||| | ||||| | || || ||||| || || |||| |||||| Sbjct 51641 CCTGAGGCAAAGCATCTCAATATTCAAATCTTCGAGACTATCTACCACGGTGCTCTTACT 51700 Query 105347 GCGAGTTC---AGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 || ||| |||| | || || || |||| || ||||| || | ||| || || || Sbjct 51701 GC---TTCCGTAGAGCTTGCCAAGATTAATGGCCCGTATGAGACATATGAAGGATCCCCT 51757 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC-AAGCTTCACTACGA 105462 || || |||| | |||||||| ||||||||||| | || | || | || || || Sbjct 51758 GCGTCGAAAGGAGAGCTTCAATATGATATGTGGGGA-GTCACTCCTACAGATCTCTGGGA 51816 Query 105463 CTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||||| |||| | ||| | | |||||| | | || | || |||||||| || | | Sbjct 51817 TTGGGATAGCT-TGAAGCAGCAGATCAAGCAACATGGCATCCGCAACAGTCTTCTGGTTG 51875 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| |||||||| ||| ||| || ||| | ||| || || |||||||| || | Sbjct 51876 CTCCTATGCCAACTGCCAGCACTAGCCAGATCCTTGGTTTCAACGAGTGCTTTGAGCCAT 51935 Query 105582 ACACGACGAACATCTA 105597 |||| | ||||| || Sbjct 51936 ACACCTCCAACATTTA 51951 >seq24 Length=853129 Score = 98.7 bits (108), Expect = 1e-15 Identities = 283/429 (66%), Gaps = 26/429 (6%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 94886 || || || || |||||| |||||| || ||| ||||| | |||||| |||||||| || Sbjct 483562 GTGGAAGGCATTTTCTTCAGTGGTTCTTT-TGCAGCTATCTTTTGGCTGAAGAAGCGTGG 483504 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 |||||| | ||||| ||| || |||||||| ||||||||||||||||| || || Sbjct 483503 CCTCATGGCTGGTCTGACCTTTTCGAACGAGCTCATCTCTCGTGACGAGGGCCTGCATAC 483444 Query 94947 AGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAA------ACCAACGACTGAGAC 95000 || ||||| || ||| | ||| | | | || |||| | || | Sbjct 483443 CGACTTTGC-ATG--CCTTCT---ATTTTCTCACTTGAAGCACCGCCCAAGCAAACAGGC 483390 Query 95001 TATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCCT 95060 | | || ||| | | ||||| |||| |||||| ||| |||| || || || || Sbjct 483389 TGTCCAGGATATCATCACCGAAGCTGTTGCCATTGAGCAAGAATTCTTAACAGAGGCTCT 483330 Query 95061 TCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATC 95120 || || || | |||| ||||| || | ||| ||||||| |||| || | Sbjct 483329 CCCCTGTGCCTTACTCGGCATGAACTCCGCTCTCATGAAGCAATATATCGAGTTCGTCGC 483270 Query 95121 TGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTGGAACTCCAAG------AATCC 95174 |||| || | |||| | | || ||| | || | ||| |||| || || Sbjct 483269 TGATCGACTTTTGA--CGGCTCTTGGTAACGAGAAAT----ACTACAAGTCAGCAAACCC 483216 Query 95175 ATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGT 95234 || |||||||||||||| || |||| || ||||| |||||||| || ||| |||| Sbjct 483215 CTTCGACTTCATGGAGAATATCTCACTCGCTGGTAAGACCAACTTCTTTGAGAAGCGGGT 483156 Query 95235 TGGGGACTA 95243 ||| || || Sbjct 483155 TGGTGATTA 483147 >seq16 Length=379189 Score = 98.7 bits (108), Expect = 1e-15 Identities = 276/416 (66%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || || || ||||| | |||||| | ||| |||| ||| | |||||| | Sbjct 192897 CGATCGAAACGTCCAGGACGCATGAGCGCTTTATCCAGGACATCTGGTCTATTCGTACCA 192838 Query 9584 GCGATGACAACAATACCTGTTTC--ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 || | ||| || | | |||| | | ||| ||||||||||| || ||||| | || | Sbjct 192837 GCAAGGACCACGA--CTTGTTCCGAAGTATTGAAACCATCCATTTCAGTCAAGATCTGAT 192780 Query 9642 TAATAGTTTGTTCCCGTTCATCATT-----CGCTGGCATA-CCACCAGCACTGCGTTGCT 9695 | | || ||| |||||||| | ||||| | || || | || | Sbjct 192779 TGAGGGTGGCTTCTCGTTCATCCGTTCCACCGCTGAAGTTGCCGCCTTTGCCACGAGATT 192720 Query 9696 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGACT 9754 | || | |||||||||||||| ||||||| ||||||||| || | || | ||| Sbjct 192719 TACCAATTGCATCAATCTCATCGATGAAGATAATGCATGGTGTGCTCTTT-CTTGCGGTA 192661 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG-- 9812 | ||||||||||| || | ||| || ||||| || ||||| ||||| || | | Sbjct 192660 GCGAAGAGATCCCGCACTCTGGAGGCACCAACACCGACGAACATTTCCACGAACTCGGAA 192601 Query 9813 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | || || | || ||||||||| | || ||||| || | || ||| || |||| Sbjct 192600 CCGCTGACGCT--GAAGAAGGGGACCTGCGACTCACCAGCGGTAGCCTTGGCTAGGAGAG 192543 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||||||| ||||| || || | | || || ||||| || |||||||| ||| Sbjct 192542 TCTTACCAGTACCAGGAGGTCCAGACAAGATAGCTCCTCGAGGGATCTTGGCACCA 192487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256717174400