Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq73 217 2e-51
seq24 102 9e-17
>seq73
Length=484926
Score = 217 bits (240), Expect = 2e-51
Identities = 412/606 (68%), Gaps = 8/606 (1%)
Strand=Plus/Plus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGC----GAGACA 19171
||||||| || || || || ||||||||||| || | || ||||| ||||||
Sbjct 50586 TCATGCGTGTGGCTGTTGGTATCCATGGCGAAGATATT----GAATCCGCAATCGAGACA 50641
Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231
||| || ||||| | |||| |||||| || || | || || || |||| || ||
Sbjct 50642 TACAACTTGATGTCGAACAAGTACTTCACACATGCTTCTCCTACACTCTTCAGTGCTGGA 50701
Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291
|| | | |||||||| || ||||| || | ||||||||| |||||||||||
Sbjct 50702 ACCCCTCAGGCTCAGATGTCATCATGCTTCCTCGTAGATATGAAGGAAGACAGCATTGAT 50761
Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351
|| ||||| || || || ||| || || || || ||| |||| || || ||
Sbjct 50762 GGTATCTATGATACCCTGAAGACATGTGCTATGATTTCGAAGAATGCCGGTGGCATTGGT 50821
Query 19352 ATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411
|| | | | ||||| | | ||| | || || || ||||| | |
Sbjct 50822 CTCAATATCCACAGAATCCGAGCTACTGGCTCCTACATTTCCGGCACCAACGGTTTCTCG 50881
Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471
| ||||| || |||||||| || || ||||||||||| ||||| || || | || ||
Sbjct 50882 AATGGTATTGTGCCAATGCTGCGTGTTTTCAACAACACAGCCAGATATGTTGATCAAGGT 50941
Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531
|| ||| || || | || || |||||||| |||||||||||||| || ||| |
Sbjct 50942 GGTAACAAGCGTCCTGGTGCCTTTGCTATCTACCTTGAGCCATGGCACGCTGATGTCTTC 51001
Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591
|| |||||||| || | ||| || ||| | ||||| | || ||||| ||||||
Sbjct 51002 GAGTTCCTCGATCTCAGAAAGAATCATGGTAAGGAGGAAGTTCGTGCACGCGATCTCTTC 51061
Query 19592 ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCAC 19651
|||||||||||||| || || |||||| ||| ||||||||| ||| ||| ||| |
Sbjct 51062 TATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTGAGAAAAACGGAGAGTGGACC 51121
Query 19652 CTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAG 19711
|||||||| || | || || ||||| ||| | || |||||||| || | ||| | |
Sbjct 51122 CTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATGTCTACGGAGATGAGTTTGAAGCT 51181
Query 19712 TTGTAC 19717
||||||
Sbjct 51182 TTGTAC 51187
Score = 179 bits (198), Expect = 4e-40
Identities = 891/1401 (64%), Gaps = 26/1401 (2%)
Strand=Plus/Minus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565
|||||| || || || ||||| ||| ||||||| ||||| ||||| ||||| ||
Sbjct 51979 GAACTCTCCTGCAAGCACACGGCGGGAGTAAATGTTGGAGGTGTATGGCTC-AAAGCACT 51921
Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625
||||| || | ||||||| || ||| || ||||| || || ||||| ||| |
Sbjct 51920 CGTTGAAACCAAGGATCTGGCTAGTGCTGGCAGTTGGCATAGGAGCAACCAGAAGACTGT 51861
Query 78626 TCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGTCCCAA------AATTCATTCG 78679
| || | ||||| |||||||| ||| | || |||||| | || | |
Sbjct 51860 TGCGGATGCCATGTTGCTTGATCTGCTGCTTCAAGCTATCCCAATCCCAGAGATCTGTAG 51801
Query 78680 CCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACG 78739
| || |||||||| || |||||| || | ||||| || || || | | |
Sbjct 51800 GAGTGACTCCCCACATATCATATTGAAGCTCTCCTTTCGACGCAGGGGATCCTTCATATG 51741
Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799
|||| || | || | |||||| || || || | || || ||||||| |
Sbjct 51740 TCTCATACGGGCCATTAATCTTGGCAAGCTCTACGGAAGCAGTAAGAGCACCGTGGTAGA 51681
Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAG--GCC 78857
|| ||||||||| | ||||| | |||| | ||| || | || ||
Sbjct 51680 TAGTCTCGAAGATTTGAATATTGAGATGCTTTGCCTCAGGTGAGTCAAAAGGAACACGCA 51621
Query 78858 GAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCAT 78917
|||| || ||| |||| |||| ||||| || || | || || || || || || |
Sbjct 51620 GAGC--CAAGAAAGCATCCGCCAATCCCTGTACACCAACTGCAATGGGACGATGACGGAA 51563
Query 78918 GTTGCTCTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGT 78976
||||||||| | ||| | | || |||| || |||| |||||||| ||||| ||
Sbjct 51562 GTTGCTCTTCCTTGCCTC-TGGGACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGT 51504
Query 78977 TACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATG---ATT--TCC 79031
| || || || | || |||| | || ||| ||| || ||| ||
Sbjct 51503 TCTTGGTAACAACTTGGACGACTTCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCA 51444
Query 79032 TTTGATGAAAG-TCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGG 79089
| | |||| | || || ||| | || |||| |||||| || || ||| ||||
Sbjct 51443 TATCCACAAAGGTGGGAAGTGCA-ATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCA 51385
Query 79090 CTAGAAACCTCGATGATTTCTGTGCACAAATTAGA-CGACTTGATGGTGCCGATGTTCTT 79148
|| |||| || ||||||||||| || || | || ||| || || | ||||||
Sbjct 51384 GATGAGTATTCGACAATCTCTGTGCACAAGTTGGAGCTACG-GATAGTTCCCAGGTTCTT 51326
Query 79149 CTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAAC 79208
|||||||||||| ||| || || ||||||||| |||| | || | || |||||
Sbjct 51325 CTGGTTGCTCTTGCGGTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGT 51266
Query 79209 CTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACC 79268
|| | || | | | ||||| | | ||| || ||| | | ||
Sbjct 51265 TTGTGCTTCAAGGATGGAATACCAGAGCTTTTGAGCCTTTACGGTCTTTCGGCCCTTGCC 51206
Query 79269 CTGTGCGA-CGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGC 79327
|| ||| | ||| || |||||| | | || | || || |||||||| | || |
Sbjct 51205 CTC-GCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGAC 51147
Query 79328 CCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGA 79387
| || ||||| | || ||||||||| ||| || ||| ||||||||| ||| |||||
Sbjct 51146 CAGGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGA 51087
Query 79388 AGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCT 79447
|||| || || ||||||| ||| |||||| ||||| ||| | ||||| | || |
Sbjct 51086 AGAGATCGGGAATCCACAAGGCATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCAT 51027
Query 79448 GGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGG 79507
| ||| | || ||||| || || | || || |||||||| ||||| || ||||| |
Sbjct 51026 GATTCTTTCTGAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAG 50967
Query 79508 CGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAA 79567
| || | ||| |||||| || || || | || || | ||| |||||||||||||
Sbjct 50966 CAAAGGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAA 50907
Query 79568 CTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGC 79627
| || ||||| ||||| || || | | || ||||| || ||| || | ||
Sbjct 50906 CACGCAGCATTGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAG 50847
Query 79628 TCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGC 79687
| || || || | | | || || ||||| |||| ||| || || || |
Sbjct 50846 TAGCTCGGATTCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCAC 50787
Query 79688 ACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC 79747
| ||| || || || ||||| || || || ||| ||||||||| | || |||||||
Sbjct 50786 ATGTCTTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGC 50727
Query 79748 AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGA 79807
| |||||||| | | || || || ||||||| || || | || || ||||
Sbjct 50726 ATGATGACATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGA 50667
Query 79808 AGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGA 79867
|| |||| | ||||| | ||| ||||| | || | || ||||| ||||
Sbjct 50666 AGTACTTGTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGA 50607
Query 79868 TGCCGACCGCGACGCGCATGA 79888
| || || || || |||||||
Sbjct 50606 TACCAACAGCCACACGCATGA 50586
>seq24
Length=853129
Score = 102 bits (112), Expect = 9e-17
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
|| || |||||| | | || || || ||||||||| || |||||| ||| || ||
Sbjct 483592 TTCGCCCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCATTTTCTTCAGTGGTTCTTTT 483533
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
||||| || ||||| || ||||||||||||||| | || |||| || || ||||||
Sbjct 483532 GCAGCTATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTGGTCTGACCTTTTCGAACGAG 483473
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131
|| || || || ||||||||||| ||| || ||||||
Sbjct 483472 CTCATCTCTCGTGACGAGGGCCTGCATACCGACTTTGCA 483434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548520960326400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |