Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq73 217 2e-51 seq24 102 9e-17 >seq73 Length=484926 Score = 217 bits (240), Expect = 2e-51 Identities = 412/606 (68%), Gaps = 8/606 (1%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGC----GAGACA 19171 ||||||| || || || || ||||||||||| || | || ||||| |||||| Sbjct 50586 TCATGCGTGTGGCTGTTGGTATCCATGGCGAAGATATT----GAATCCGCAATCGAGACA 50641 Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231 ||| || ||||| | |||| |||||| || || | || || || |||| || || Sbjct 50642 TACAACTTGATGTCGAACAAGTACTTCACACATGCTTCTCCTACACTCTTCAGTGCTGGA 50701 Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || | | |||||||| || ||||| || | ||||||||| ||||||||||| Sbjct 50702 ACCCCTCAGGCTCAGATGTCATCATGCTTCCTCGTAGATATGAAGGAAGACAGCATTGAT 50761 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || ||||| || || || ||| || || || || ||| |||| || || || Sbjct 50762 GGTATCTATGATACCCTGAAGACATGTGCTATGATTTCGAAGAATGCCGGTGGCATTGGT 50821 Query 19352 ATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411 || | | | ||||| | | ||| | || || || ||||| | | Sbjct 50822 CTCAATATCCACAGAATCCGAGCTACTGGCTCCTACATTTCCGGCACCAACGGTTTCTCG 50881 Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471 | ||||| || |||||||| || || ||||||||||| ||||| || || | || || Sbjct 50882 AATGGTATTGTGCCAATGCTGCGTGTTTTCAACAACACAGCCAGATATGTTGATCAAGGT 50941 Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531 || ||| || || | || || |||||||| |||||||||||||| || ||| | Sbjct 50942 GGTAACAAGCGTCCTGGTGCCTTTGCTATCTACCTTGAGCCATGGCACGCTGATGTCTTC 51001 Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591 || |||||||| || | ||| || ||| | ||||| | || ||||| |||||| Sbjct 51002 GAGTTCCTCGATCTCAGAAAGAATCATGGTAAGGAGGAAGTTCGTGCACGCGATCTCTTC 51061 Query 19592 ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCAC 19651 |||||||||||||| || || |||||| ||| ||||||||| ||| ||| ||| | Sbjct 51062 TATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTGAGAAAAACGGAGAGTGGACC 51121 Query 19652 CTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAG 19711 |||||||| || | || || ||||| ||| | || |||||||| || | ||| | | Sbjct 51122 CTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATGTCTACGGAGATGAGTTTGAAGCT 51181 Query 19712 TTGTAC 19717 |||||| Sbjct 51182 TTGTAC 51187 Score = 179 bits (198), Expect = 4e-40 Identities = 891/1401 (64%), Gaps = 26/1401 (2%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565 |||||| || || || ||||| ||| ||||||| ||||| ||||| ||||| || Sbjct 51979 GAACTCTCCTGCAAGCACACGGCGGGAGTAAATGTTGGAGGTGTATGGCTC-AAAGCACT 51921 Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625 ||||| || | ||||||| || ||| || ||||| || || ||||| ||| | Sbjct 51920 CGTTGAAACCAAGGATCTGGCTAGTGCTGGCAGTTGGCATAGGAGCAACCAGAAGACTGT 51861 Query 78626 TCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGTCCCAA------AATTCATTCG 78679 | || | ||||| |||||||| ||| | || |||||| | || | | Sbjct 51860 TGCGGATGCCATGTTGCTTGATCTGCTGCTTCAAGCTATCCCAATCCCAGAGATCTGTAG 51801 Query 78680 CCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACG 78739 | || |||||||| || |||||| || | ||||| || || || | | | Sbjct 51800 GAGTGACTCCCCACATATCATATTGAAGCTCTCCTTTCGACGCAGGGGATCCTTCATATG 51741 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799 |||| || | || | |||||| || || || | || || ||||||| | Sbjct 51740 TCTCATACGGGCCATTAATCTTGGCAAGCTCTACGGAAGCAGTAAGAGCACCGTGGTAGA 51681 Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAG--GCC 78857 || ||||||||| | ||||| | |||| | ||| || | || || Sbjct 51680 TAGTCTCGAAGATTTGAATATTGAGATGCTTTGCCTCAGGTGAGTCAAAAGGAACACGCA 51621 Query 78858 GAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCAT 78917 |||| || ||| |||| |||| ||||| || || | || || || || || || | Sbjct 51620 GAGC--CAAGAAAGCATCCGCCAATCCCTGTACACCAACTGCAATGGGACGATGACGGAA 51563 Query 78918 GTTGCTCTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGT 78976 ||||||||| | ||| | | || |||| || |||| |||||||| ||||| || Sbjct 51562 GTTGCTCTTCCTTGCCTC-TGGGACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGT 51504 Query 78977 TACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATG---ATT--TCC 79031 | || || || | || |||| | || ||| ||| || ||| || Sbjct 51503 TCTTGGTAACAACTTGGACGACTTCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCA 51444 Query 79032 TTTGATGAAAG-TCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGG 79089 | | |||| | || || ||| | || |||| |||||| || || ||| |||| Sbjct 51443 TATCCACAAAGGTGGGAAGTGCA-ATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCA 51385 Query 79090 CTAGAAACCTCGATGATTTCTGTGCACAAATTAGA-CGACTTGATGGTGCCGATGTTCTT 79148 || |||| || ||||||||||| || || | || ||| || || | |||||| Sbjct 51384 GATGAGTATTCGACAATCTCTGTGCACAAGTTGGAGCTACG-GATAGTTCCCAGGTTCTT 51326 Query 79149 CTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAAC 79208 |||||||||||| ||| || || ||||||||| |||| | || | || ||||| Sbjct 51325 CTGGTTGCTCTTGCGGTTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGT 51266 Query 79209 CTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACC 79268 || | || | | | ||||| | | ||| || ||| | | || Sbjct 51265 TTGTGCTTCAAGGATGGAATACCAGAGCTTTTGAGCCTTTACGGTCTTTCGGCCCTTGCC 51206 Query 79269 CTGTGCGA-CGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGC 79327 || ||| | ||| || |||||| | | || | || || |||||||| | || | Sbjct 51205 CTC-GCGCTCATACTTCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGAC 51147 Query 79328 CCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGA 79387 | || ||||| | || ||||||||| ||| || ||| ||||||||| ||| ||||| Sbjct 51146 CAGGACACTCATTTGGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGA 51087 Query 79388 AGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCT 79447 |||| || || ||||||| ||| |||||| ||||| ||| | ||||| | || | Sbjct 51086 AGAGATCGGGAATCCACAAGGCATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCAT 51027 Query 79448 GGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGG 79507 | ||| | || ||||| || || | || || |||||||| ||||| || ||||| | Sbjct 51026 GATTCTTTCTGAGATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAG 50967 Query 79508 CGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAA 79567 | || | ||| |||||| || || || | || || | ||| ||||||||||||| Sbjct 50966 CAAAGGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAA 50907 Query 79568 CTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGC 79627 | || ||||| ||||| || || | | || ||||| || ||| || | || Sbjct 50906 CACGCAGCATTGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAG 50847 Query 79628 TCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGC 79687 | || || || | | | || || ||||| |||| ||| || || || | Sbjct 50846 TAGCTCGGATTCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCAC 50787 Query 79688 ACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC 79747 | ||| || || || ||||| || || || ||| ||||||||| | || ||||||| Sbjct 50786 ATGTCTTCAGGGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGC 50727 Query 79748 AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGA 79807 | |||||||| | | || || || ||||||| || || | || || |||| Sbjct 50726 ATGATGACATCTGAGCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGA 50667 Query 79808 AGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGA 79867 || |||| | ||||| | ||| ||||| | || | || ||||| |||| Sbjct 50666 AGTACTTGTTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGA 50607 Query 79868 TGCCGACCGCGACGCGCATGA 79888 | || || || || ||||||| Sbjct 50606 TACCAACAGCCACACGCATGA 50586 >seq24 Length=853129 Score = 102 bits (112), Expect = 9e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || |||||| | | || || || ||||||||| || |||||| ||| || || Sbjct 483592 TTCGCCCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCATTTTCTTCAGTGGTTCTTTT 483533 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 ||||| || ||||| || ||||||||||||||| | || |||| || || |||||| Sbjct 483532 GCAGCTATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTGGTCTGACCTTTTCGAACGAG 483473 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 || || || || ||||||||||| ||| || |||||| Sbjct 483472 CTCATCTCTCGTGACGAGGGCCTGCATACCGACTTTGCA 483434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520960326400