Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq73 205 1e-47
seq24 89.7 6e-13
>seq73
Length=484926
Score = 205 bits (226), Expect = 1e-47
Identities = 473/701 (67%), Gaps = 10/701 (1%)
Strand=Plus/Plus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||| ||| |||| ||| | |||||||| || || || | || || || ||||
Sbjct 50636 GAGACATACAACTTGATGTCGAACAAGTACTTCACACATGCTTCTCCTACACTCTTCAGT 50695
Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362
||||| || ||| |||||||||| |||||||| || | |||||||| |||
Sbjct 50696 GCTGGAACCCCTCAGGCTCAGATGTCATCATGCTTCCTCGTAGATATGAAGGAAGACAGC 50755
Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422
|| || || ||||| || || || ||| ||||| || || ||| | |||||
Sbjct 50756 ATTGATGGTATCTATGATACCCTGAAGACATGTGCTATGATTTCGAAGAATGCCGGTGGC 50815
Query 53423 ATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
|| ||| || | | | | ||| |||| || | ||| | || || || ||||
Sbjct 50816 ATTGGTCTCAATATCCACAGAA--TCCGAGCTACTGGCTCCTACATTTCCGGCACCAACG 50873
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
| || | |||| || ||||| ||||| || || ||||||||||| ||| | || ||
Sbjct 50874 GTTTCTCGAATGGTATTGTGCCAATGCTGCGTGTTTTCAACAACACAGCCAGATATGTTG 50933
Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600
| || |||||| ||||| || | || || |||||||| ||||| |||||||| |
Sbjct 50934 ATCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACCTTGAGCCATGGCACGCTG 50993
Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659
| | | ||||| ||||| || | |||||| ||| | || || | || ||| ||
Sbjct 50994 ATGTCTTCGAGTTCCTCGATCTCAGAAAGAATCATGGTAAGGAGGAAGTTCG-TGCACGC 51052
Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719
|| || || || |||||||||| || ||||||||| | | ||| ||||| |||
Sbjct 51053 GATCTCTTCTATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTGAGAAAAACGGA 51112
Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779
|||||| ||||||||| || || ||||| || || || | ||||||||| || |||
Sbjct 51113 GAGTGGACCCTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATGTCTACGGAGATGAG 51172
Query 53780 TTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGC 53838
||| | | |||| || ||| | || | ||||| | |||| || |||||
Sbjct 51173 TTTGAAGCTTTGTACGAGAAGTATG-AGCGCGAGGGCAAGGGCCGAAAGACCGTAAAGGC 51231
Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCCGTACATGT 53897
| || | ||| || | ||||| | ||| || ||||| |||| || | ||||
Sbjct 51232 TCAAAAGCTCTGGTATTCCATCCTTGA-AGCACAAACCGAGACTGGAAACCCATTCATGC 51290
Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
|||||||||| || |||| ||||||||||||||||||
Sbjct 51291 TCTACAAGGATGCGTGCAACCGCAAGAGCAACCAGAAGAAC 51331
>seq24
Length=853129
Score = 89.7 bits (98), Expect = 6e-13
Identities = 95/124 (77%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849
|| |||||||| | || |||| ||| || ||||||||||||| ||||||||| ||
Sbjct 483474 TCGTTCGAAAAGGTCAGACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCA 483533
Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909
|| |||||||||||||| |||||||| || || || || || | ||||| |||||
Sbjct 483534 AAAGAACCACTGAAGAAAATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAA- 483592
Query 74910 GGTG 74913
||||
Sbjct 483593 GGTG 483596
Score = 87.8 bits (96), Expect = 2e-12
Identities = 180/265 (68%), Gaps = 7/265 (3%)
Strand=Plus/Plus
Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTG 75065
|| |||||||| | ||||||||| || ||||| ||||| || || || ||| |
Sbjct 483744 GGCTCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATC 483803
Query 75066 AACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAAT 75123
| |||| | | |||||| | |||||||| | |||||| || || | |||||
Sbjct 483804 ATGATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGC 483863
Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183
||| | | ||||| |||||||||| |||||||||||||| || || || ||
Sbjct 483864 TCAA--CCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAG 483921
Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCA 75240
| ||||| |||||||| ||| | ||| || | ||| || | || ||| | |
Sbjct 483922 ACACAAAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAA 483981
Query 75241 AATCAATCTCCTCGACCGTCCAGAA 75265
|||||| || ||| | ||||||||
Sbjct 483982 GATCAATTTCTTCGGCGGTCCAGAA 484006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212169488000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |