Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq73 205 1e-47 seq24 89.7 6e-13 >seq73 Length=484926 Score = 205 bits (226), Expect = 1e-47 Identities = 473/701 (67%), Gaps = 10/701 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| |||| ||| | |||||||| || || || | || || || |||| Sbjct 50636 GAGACATACAACTTGATGTCGAACAAGTACTTCACACATGCTTCTCCTACACTCTTCAGT 50695 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 ||||| || ||| |||||||||| |||||||| || | |||||||| ||| Sbjct 50696 GCTGGAACCCCTCAGGCTCAGATGTCATCATGCTTCCTCGTAGATATGAAGGAAGACAGC 50755 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || ||||| || || || ||| ||||| || || ||| | ||||| Sbjct 50756 ATTGATGGTATCTATGATACCCTGAAGACATGTGCTATGATTTCGAAGAATGCCGGTGGC 50815 Query 53423 ATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 || ||| || | | | | ||| |||| || | ||| | || || || |||| Sbjct 50816 ATTGGTCTCAATATCCACAGAA--TCCGAGCTACTGGCTCCTACATTTCCGGCACCAACG 50873 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | || | |||| || ||||| ||||| || || ||||||||||| ||| | || || Sbjct 50874 GTTTCTCGAATGGTATTGTGCCAATGCTGCGTGTTTTCAACAACACAGCCAGATATGTTG 50933 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | || |||||| ||||| || | || || |||||||| ||||| |||||||| | Sbjct 50934 ATCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACCTTGAGCCATGGCACGCTG 50993 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659 | | | ||||| ||||| || | |||||| ||| | || || | || ||| || Sbjct 50994 ATGTCTTCGAGTTCCTCGATCTCAGAAAGAATCATGGTAAGGAGGAAGTTCG-TGCACGC 51052 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 || || || || |||||||||| || ||||||||| | | ||| ||||| ||| Sbjct 51053 GATCTCTTCTATGCCTTGTGGATTCCCGATCTCTTCATGAAGAGGGTTGAGAAAAACGGA 51112 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 |||||| ||||||||| || || ||||| || || || | ||||||||| || ||| Sbjct 51113 GAGTGGACCCTGATGTGTCCAAATGAGTGTCCTGGTCTAGCAGATGTCTACGGAGATGAG 51172 Query 53780 TTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGC 53838 ||| | | |||| || ||| | || | ||||| | |||| || ||||| Sbjct 51173 TTTGAAGCTTTGTACGAGAAGTATG-AGCGCGAGGGCAAGGGCCGAAAGACCGTAAAGGC 51231 Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCCGTACATGT 53897 | || | ||| || | ||||| | ||| || ||||| |||| || | |||| Sbjct 51232 TCAAAAGCTCTGGTATTCCATCCTTGA-AGCACAAACCGAGACTGGAAACCCATTCATGC 51290 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||||| || |||| |||||||||||||||||| Sbjct 51291 TCTACAAGGATGCGTGCAACCGCAAGAGCAACCAGAAGAAC 51331 >seq24 Length=853129 Score = 89.7 bits (98), Expect = 6e-13 Identities = 95/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || |||||||| | || |||| ||| || ||||||||||||| ||||||||| || Sbjct 483474 TCGTTCGAAAAGGTCAGACCAGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCA 483533 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || |||||||||||||| |||||||| || || || || || | ||||| ||||| Sbjct 483534 AAAGAACCACTGAAGAAAATGCCTTCCACGGCAGCGAATGCAACCAAACGTTGGGCGAA- 483592 Query 74910 GGTG 74913 |||| Sbjct 483593 GGTG 483596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/265 (68%), Gaps = 7/265 (3%) Strand=Plus/Plus Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTG 75065 || |||||||| | ||||||||| || ||||| ||||| || || || ||| | Sbjct 483744 GGCTCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATC 483803 Query 75066 AACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAAT 75123 | |||| | | |||||| | |||||||| | |||||| || || | ||||| Sbjct 483804 ATGATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGC 483863 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 ||| | | ||||| |||||||||| |||||||||||||| || || || || Sbjct 483864 TCAA--CCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAG 483921 Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCA 75240 | ||||| |||||||| ||| | ||| || | ||| || | || ||| | | Sbjct 483922 ACACAAAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAA 483981 Query 75241 AATCAATCTCCTCGACCGTCCAGAA 75265 |||||| || ||| | |||||||| Sbjct 483982 GATCAATTTCTTCGGCGGTCCAGAA 484006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212169488000