Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq73 199 5e-46 seq46 188 8e-43 seq22 176 5e-39 seq39 156 5e-33 seq24 127 2e-24 >seq73 Length=484926 Score = 199 bits (220), Expect = 5e-46 Identities = 643/989 (65%), Gaps = 28/989 (3%) Strand=Plus/Minus Query 80782 GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACC 80841 ||||| || | ||||| ||||| |||||||| ||||| ||| |||||||| Sbjct 51549 GCCTCTGGGACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGTAACAACT 51490 Query 80842 CGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCC 80895 | || || ||||| ||||| ||||| | | |||| | |||||| | Sbjct 51489 TGGACGACTTCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCATATCCACAAAGGTG 51430 Query 80896 GGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACG 80955 ||||| | || |||| ||||| || || ||||| || ||| || | ||||| Sbjct 51429 GGAAGTGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACA 51370 Query 80956 ATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCG 81015 || || |||||||| || || || || |||||||| |||||||| |||| | Sbjct 51369 ATCTCTGTGCACAAGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGG 51310 Query 81016 TTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATG 81075 ||||| || ||||||||| |||| | ||| | || |||||| |||| | |||||| Sbjct 51309 TTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATG 51250 Query 81076 GCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTG 81135 | | ||| | || | ||||| || ||| ||| ||||| ||| | ||||||| Sbjct 51249 GAATACCAGAGCTTTTGAGCCTTTACGGTCTTTCGGCCCTTGCCCTCGCGCTCATACTTC 51190 Query 81136 GCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192 |||| |||||| |||| | |||| | || | || | || ||||| || Sbjct 51189 TCGTACAAAGCTTCA---AACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTT 51133 Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATC 81252 || ||||||||| ||| || || ||||| || ||||||||| || || ||| Sbjct 51132 GGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATC 51073 Query 81253 CAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311 || | ||| ||| || ||||| ||| || | ||||| | ||| || || | | Sbjct 51072 CACAAGGCATAGAAGAGATCGCGTGCA-CGAACTTCCTCCTTACCATGATTCTTTCTGAG 51014 Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC---- 81366 ||||| || || | || || || ||||||||||| || || | || | | || Sbjct 51013 ATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGG 50954 Query 81367 -CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 | |||| | ||||| || | || || | ||| || ||| || ||||||| ||| Sbjct 50953 ACGCTTGTTA---CCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCAT 50897 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 || | ||||||| || |||||| || || || || || | || || | Sbjct 50896 TGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGAT 50837 Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCAT 81545 || ||| ||||| |||||||| | ||| |||||| |||||| |||| Sbjct 50836 TCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAG 50777 Query 81546 GGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACAT 81605 ||| ||||| || || || ||||| |||| ||||| || | | ||| || |||||| Sbjct 50776 GGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACAT 50717 Query 81606 CTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663 |||| || | | | || ||| |||| ||||| || | || || |||| || | Sbjct 50716 CTGA--GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTG 50659 Query 81664 TTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATA 81723 || ||||||| || || || || | || | |||||| || || || ||||| | | Sbjct 50658 TTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACA 50599 Query 81724 GCTACACGCATAAACATGTACTG-GGGCG 81751 || |||||||| | ||||| || ||||| Sbjct 50598 GCCACACGCATGATCATGTGTTGTGGGCG 50570 >seq46 Length=1090308 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| || || |||||||| || || |||||||| || || Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || |||||||||||||||||||||||||| ||||| Sbjct 104695 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAA 104636 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||||| || || || | ||||| || Sbjct 104635 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAAC 104576 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| |||||||| | ||| | ||||| || ||||| Sbjct 104575 ATCCAAAAAGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGG 104529 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || |||||||| ||||| || || || || Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| |||| || |||||||||||||| || || || ||||| Sbjct 104239 GATACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 104180 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| ||||| ||||| ||||| |||||||||| |||||| | ||| ||||| || Sbjct 104179 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGC-GACTACAA 104121 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| |||||| |||||| || | ||| | |||||||| ||||| || Sbjct 104120 CATCCAGAAGGAAAGCACTCTACACTTGGTCCTCCGTCTTCGTGGTGGCCA 104070 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| ||||| | || |||||||| Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||| | || ||||| || |||||||| || || || ||||| Sbjct 104467 GACACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAA 104408 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| ||||| ||||| ||||| |||||||||| || || | ||| ||||| || Sbjct 104407 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGC-GACTACAA 104349 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| |||||| || | || | ||||| || ||||| Sbjct 104348 CATCCAAAAGGAGAGCACTCTCCACTTGGTTCTCCGTCTCCGTGGTGG 104301 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||||||||| ||||| || | ||| | || | ||| Sbjct 104959 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTTAAGAGC 104900 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| || || || || || |||||||| || || ||||| ||| Sbjct 104899 AAGATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGCAAG 104840 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | |||||||| |||| ||||| || || |||||| Sbjct 104839 CAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTTCAT 104780 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||| || || Sbjct 104779 CTTGTCCTCCGTCTTCGTGGCGG 104757 >seq22 Length=1308897 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || |||||||| || |||||||| ||||| Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || ||||||||||||||||| ||||| ||||| Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| || ||||| || ||||||| ||||||||| | ||||| || Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| |||||||| ||| | || || || ||||| Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 1149392 >seq39 Length=1363582 Score = 156 bits (172), Expect = 5e-33 Identities = 157/202 (78%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 27394 AATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAG 27453 ||||| |||||| || | ||| |||||||| ||||| || |||||||| || |||||| Sbjct 689691 AATAT--CTATAA--CACAGCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAG 689636 Query 27454 GTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT 27513 || ||||| |||| ||| | ||| | ||| | || || ||||| ||||| |||||| Sbjct 689635 GTGGAGTCGTCCGATACCATCGACAATGTCAAGTCGAAGATCCAGGATAAGGAAGGAATT 689576 Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573 ||||| ||||| ||||| | || || ||||| |||||||||||||||| || ||||| Sbjct 689575 CCTCCGGACCAACAGCGATTGATCTTCGCTGGAAAGCAACTCGAGGATGGCCGAACCCTG 689516 Query 27574 GCAGACTATAATGTCCAAAAGG 27595 ||||||| ||| |||| |||| Sbjct 689515 TCAGACTACAATATCCAGAAGG 689494 >seq24 Length=853129 Score = 127 bits (140), Expect = 2e-24 Identities = 285/421 (68%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 |||||||| |||||||| ||| || || |||| || ||||| || ||||| ||| Sbjct 483562 GTGGAAGGCATTTTCTTCAGTGGTTCTTTTGCAGCTATCTTTTGGCTGAAGAAGCGTGGC 483503 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 || ||| | |||||| | |||||||||||||| |||||||| |||||||| || || Sbjct 483502 CTCATGGCTGGTCTGACCTTTTCGAACGAGCTCATCTCTCGTGACGAGGGCCTGCATACC 483443 Query 64858 GAATTTGCGGTTACC--CTGTTCAGCCACCTCAAGGACAAACC-ATCACATGGGACTATA 64914 || ||||| | || || || ||| | ||| || || | || | || || | Sbjct 483442 GACTTTGC--ATGCCTTCTATTTTCTCACTTGAAGCACCGCCCAAGCAAACAGG-CTGTC 483386 Query 64915 ATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTCCG 64974 ||||| | | ||||| | ||||| | |||||| | || | || || || Sbjct 483385 CAGGATATCATCACCGAAGCTGTTGCCATTGAGCAAGAATTCTTAACAGAGGCTCTCCCC 483326 Query 64975 TGTCGTCTCA-TCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGA 65033 ||| | || | |||||||| | ||| | ||||| || |||||||| || || || || Sbjct 483325 TGT-GCCTTACTCGGCATGAACTCCGCTCTCATGAAGCAATATATCGAGTTCGTCGCTGA 483267 Query 65034 TCGCCTGCTTACTCAGTTTGGTATTAAGCCCTACTGGAATTCTTCAAATCCATTTGACTG 65093 ||| || | || |||||| || |||| || || |||| || || |||| Sbjct 483266 TCGACTTTTGACGGCTCTTGGTAACGAGAAATACTACAAGTCAGCAAACCCCTTCGACTT 483207 Query 65094 GATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGTGATTA 65153 ||||||| ||| || | || ||||| ||||| ||||| ||| |||| |||||||| Sbjct 483206 CATGGAGAATATCTCACTCGCTGGTAAGACCAACTTCTTTGAGAAGCGGGTTGGTGATTA 483147 Query 65154 C 65154 | Sbjct 483146 C 483146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306407827200