Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq73 199 5e-46
seq46 188 8e-43
seq22 176 5e-39
seq39 156 5e-33
seq24 127 2e-24
>seq73
Length=484926
Score = 199 bits (220), Expect = 5e-46
Identities = 643/989 (65%), Gaps = 28/989 (3%)
Strand=Plus/Minus
Query 80782 GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACC 80841
||||| || | ||||| ||||| |||||||| ||||| ||| ||||||||
Sbjct 51549 GCCTCTGGGACGGGGTAGTAGTTAACATCGATGATCTTGTTCAAGTTCTTGGTAACAACT 51490
Query 80842 CGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCC 80895
| || || ||||| ||||| ||||| | | |||| | |||||| |
Sbjct 51489 TGGACGACTTCGTGAAGCTTCTGGAAGTCATAAGTCCCATTGTTCATATCCACAAAGGTG 51430
Query 80896 GGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACG 80955
||||| | || |||| ||||| || || ||||| || ||| || | |||||
Sbjct 51429 GGAAGTGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACA 51370
Query 80956 ATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCG 81015
|| || |||||||| || || || || |||||||| |||||||| |||| |
Sbjct 51369 ATCTCTGTGCACAAGTTGGAGCTACGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGG 51310
Query 81016 TTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATG 81075
||||| || ||||||||| |||| | ||| | || |||||| |||| | ||||||
Sbjct 51309 TTGCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATG 51250
Query 81076 GCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTG 81135
| | ||| | || | ||||| || ||| ||| ||||| ||| | |||||||
Sbjct 51249 GAATACCAGAGCTTTTGAGCCTTTACGGTCTTTCGGCCCTTGCCCTCGCGCTCATACTTC 51190
Query 81136 GCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192
|||| |||||| |||| | |||| | || | || | || ||||| ||
Sbjct 51189 TCGTACAAAGCTTCA---AACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTT 51133
Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATC 81252
|| ||||||||| ||| || || ||||| || ||||||||| || || |||
Sbjct 51132 GGACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATC 51073
Query 81253 CAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311
|| | ||| ||| || ||||| ||| || | ||||| | ||| || || | |
Sbjct 51072 CACAAGGCATAGAAGAGATCGCGTGCA-CGAACTTCCTCCTTACCATGATTCTTTCTGAG 51014
Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC---- 81366
||||| || || | || || || ||||||||||| || || | || | | ||
Sbjct 51013 ATCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGG 50954
Query 81367 -CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425
| |||| | ||||| || | || || | ||| || ||| || ||||||| |||
Sbjct 50953 ACGCTTGTTA---CCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCAT 50897
Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485
|| | ||||||| || |||||| || || || || || | || || |
Sbjct 50896 TGGCACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGAT 50837
Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCAT 81545
|| ||| ||||| |||||||| | ||| |||||| |||||| ||||
Sbjct 50836 TCTGTGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAG 50777
Query 81546 GGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACAT 81605
||| ||||| || || || ||||| |||| ||||| || | | ||| || ||||||
Sbjct 50776 GGTATCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACAT 50717
Query 81606 CTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663
|||| || | | | || ||| |||| ||||| || | || || |||| || |
Sbjct 50716 CTGA--GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTG 50659
Query 81664 TTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATA 81723
|| ||||||| || || || || | || | |||||| || || || ||||| | |
Sbjct 50658 TTCGACATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACA 50599
Query 81724 GCTACACGCATAAACATGTACTG-GGGCG 81751
|| |||||||| | ||||| || |||||
Sbjct 50598 GCCACACGCATGATCATGTGTTGTGGGCG 50570
>seq46
Length=1090308
Score = 188 bits (208), Expect = 8e-43
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||||||||| || || |||||||| || || |||||||| || ||
Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||| | || |||||||||||||||||||||||||| |||||
Sbjct 104695 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAA 104636
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||||| ||||| || ||||||| || || || | ||||| ||
Sbjct 104635 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAAC 104576
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| ||||| |||||||| | ||| | ||||| || |||||
Sbjct 104575 ATCCAAAAAGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGG 104529
Score = 161 bits (178), Expect = 1e-34
Identities = 176/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| | || || |||||||| ||||| || || || ||
Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || | ||| |||| || |||||||||||||| || || || |||||
Sbjct 104239 GATACCATTGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 104180
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| ||||| ||||| ||||| |||||||||| |||||| | ||| ||||| ||
Sbjct 104179 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGC-GACTACAA 104121
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| |||||| |||||| || | ||| | |||||||| ||||| ||
Sbjct 104120 CATCCAGAAGGAAAGCACTCTACACTTGGTCCTCCGTCTTCGTGGTGGCCA 104070
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || || ||||| ||||| | || ||||||||
Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || ||||| | || ||||| || |||||||| || || || |||||
Sbjct 104467 GACACCATCGACAACGTGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAA 104408
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| ||||| ||||| ||||| |||||||||| || || | ||| ||||| ||
Sbjct 104407 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGC-GACTACAA 104349
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| |||||| || | || | ||||| || |||||
Sbjct 104348 CATCCAAAAGGAGAGCACTCTCCACTTGGTTCTCCGTCTCCGTGGTGG 104301
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||||||||| ||||| || | ||| | || | |||
Sbjct 104959 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTTAAGAGC 104900
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || || ||||||||||| || || || || || |||||||| || || ||||| |||
Sbjct 104899 AAGATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGCAAG 104840
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | || ||||| | |||||||| |||| ||||| || || ||||||
Sbjct 104839 CAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTTCAT 104780
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | |||||||| || ||
Sbjct 104779 CTTGTCCTCCGTCTTCGTGGCGG 104757
>seq22
Length=1308897
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || || |||||||| || |||||||| |||||
Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || ||||||||||||||||| ||||| |||||
Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || ||||| || ||||| || ||||||| ||||||||| | ||||| ||
Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| |||||||| ||| | || || || |||||
Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 1149392
>seq39
Length=1363582
Score = 156 bits (172), Expect = 5e-33
Identities = 157/202 (78%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 27394 AATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAG 27453
||||| |||||| || | ||| |||||||| ||||| || |||||||| || ||||||
Sbjct 689691 AATAT--CTATAA--CACAGCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAG 689636
Query 27454 GTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT 27513
|| ||||| |||| ||| | ||| | ||| | || || ||||| ||||| ||||||
Sbjct 689635 GTGGAGTCGTCCGATACCATCGACAATGTCAAGTCGAAGATCCAGGATAAGGAAGGAATT 689576
Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573
||||| ||||| ||||| | || || ||||| |||||||||||||||| || |||||
Sbjct 689575 CCTCCGGACCAACAGCGATTGATCTTCGCTGGAAAGCAACTCGAGGATGGCCGAACCCTG 689516
Query 27574 GCAGACTATAATGTCCAAAAGG 27595
||||||| ||| |||| ||||
Sbjct 689515 TCAGACTACAATATCCAGAAGG 689494
>seq24
Length=853129
Score = 127 bits (140), Expect = 2e-24
Identities = 285/421 (68%), Gaps = 8/421 (2%)
Strand=Plus/Minus
Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797
|||||||| |||||||| ||| || || |||| || ||||| || ||||| |||
Sbjct 483562 GTGGAAGGCATTTTCTTCAGTGGTTCTTTTGCAGCTATCTTTTGGCTGAAGAAGCGTGGC 483503
Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857
|| ||| | |||||| | |||||||||||||| |||||||| |||||||| || ||
Sbjct 483502 CTCATGGCTGGTCTGACCTTTTCGAACGAGCTCATCTCTCGTGACGAGGGCCTGCATACC 483443
Query 64858 GAATTTGCGGTTACC--CTGTTCAGCCACCTCAAGGACAAACC-ATCACATGGGACTATA 64914
|| ||||| | || || || ||| | ||| || || | || | || || |
Sbjct 483442 GACTTTGC--ATGCCTTCTATTTTCTCACTTGAAGCACCGCCCAAGCAAACAGG-CTGTC 483386
Query 64915 ATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTCCG 64974
||||| | | ||||| | ||||| | |||||| | || | || || ||
Sbjct 483385 CAGGATATCATCACCGAAGCTGTTGCCATTGAGCAAGAATTCTTAACAGAGGCTCTCCCC 483326
Query 64975 TGTCGTCTCA-TCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGA 65033
||| | || | |||||||| | ||| | ||||| || |||||||| || || || ||
Sbjct 483325 TGT-GCCTTACTCGGCATGAACTCCGCTCTCATGAAGCAATATATCGAGTTCGTCGCTGA 483267
Query 65034 TCGCCTGCTTACTCAGTTTGGTATTAAGCCCTACTGGAATTCTTCAAATCCATTTGACTG 65093
||| || | || |||||| || |||| || || |||| || || ||||
Sbjct 483266 TCGACTTTTGACGGCTCTTGGTAACGAGAAATACTACAAGTCAGCAAACCCCTTCGACTT 483207
Query 65094 GATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGTGATTA 65153
||||||| ||| || | || ||||| ||||| ||||| ||| |||| ||||||||
Sbjct 483206 CATGGAGAATATCTCACTCGCTGGTAAGACCAACTTCTTTGAGAAGCGGGTTGGTGATTA 483147
Query 65154 C 65154
|
Sbjct 483146 C 483146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306407827200
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